Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   S101447_RS06090 Genome accession   NZ_CP021524
Coordinates   1241437..1242462 (-) Length   341 a.a.
NCBI ID   WP_220400889.1    Uniprot ID   -
Organism   Acetobacter ascendens strain SRCM101447     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1236437..1247462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S101447_RS06070 (S101447_01222) mdoH 1236737..1238869 (-) 2133 WP_204251361.1 glucans biosynthesis glucosyltransferase MdoH -
  S101447_RS06075 (S101447_01223) - 1238872..1240416 (-) 1545 WP_087635618.1 glucan biosynthesis protein -
  S101447_RS06080 (S101447_01224) - 1240483..1240848 (-) 366 WP_019089015.1 winged helix-turn-helix domain-containing protein -
  S101447_RS06085 (S101447_01225) - 1240918..1241430 (+) 513 WP_070323959.1 GNAT family N-acetyltransferase -
  S101447_RS06090 (S101447_01226) recA 1241437..1242462 (-) 1026 WP_220400889.1 recombinase RecA Machinery gene
  S101447_RS06095 (S101447_01227) - 1242724..1244178 (-) 1455 WP_019089017.1 gamma-glutamyltransferase -
  S101447_RS06100 (S101447_01228) - 1244226..1245104 (+) 879 WP_019089018.1 DsbA family protein -
  S101447_RS06105 (S101447_01229) hemA 1245157..1246464 (-) 1308 WP_087635619.1 5-aminolevulinate synthase -
  S101447_RS06110 (S101447_01230) - 1246525..1247001 (-) 477 WP_019089020.1 hypothetical protein -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 36648.96 Da        Isoelectric Point: 6.7070

>NTDB_id=231860 S101447_RS06090 WP_220400889.1 1241437..1242462(-) (recA) [Acetobacter ascendens strain SRCM101447]
MDKAKALEGALGQIERAFGKGSVMRLGQRPKVEADVIPTGSLGLDIALGIGGLPRGRVVEIYGPESSGKTTLALHAIAEA
QKRGGTCAFIDAEHALDPGYAKKLGVDVDNLLISQPDAGEQALEIADTLVRSGAIDVLVVDSVAALVPRAELEGDMGDSH
VGLHARLMSQALRKLTGTVARSNTLMIFLNQIRLKIGVMFGNPETTTGGNALKFYSSVRMDIRRIGSIKDKDEATGNQTR
VKVVKNKMAPPFRQVEFDIMYGEGISKVGELIDLGVKAGVVEKSGSWFSYDSQRIGQGRENAKQFLRDHPEMAADIERRV
REHAGVVAEAMMVAPEHHEGD

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=231860 S101447_RS06090 WP_220400889.1 1241437..1242462(-) (recA) [Acetobacter ascendens strain SRCM101447]
ATGGATAAGGCAAAGGCTCTGGAAGGCGCGCTGGGACAGATTGAACGTGCTTTTGGCAAAGGTTCTGTCATGCGCTTGGG
GCAGCGGCCCAAAGTAGAGGCAGATGTTATTCCTACTGGTTCCCTTGGGCTGGATATTGCGCTCGGAATTGGCGGGTTGC
CCCGTGGCCGTGTGGTAGAAATTTACGGGCCAGAAAGCTCTGGTAAAACCACACTTGCGCTCCATGCTATTGCAGAAGCG
CAAAAACGTGGTGGTACCTGTGCTTTTATTGATGCCGAGCACGCGCTGGACCCCGGTTATGCCAAAAAACTGGGTGTGGA
CGTAGATAACCTGCTGATCAGCCAGCCAGATGCTGGTGAACAGGCGCTGGAAATTGCAGATACACTTGTACGATCCGGTG
CTATTGACGTGCTGGTGGTAGATAGTGTTGCAGCACTGGTGCCGCGCGCAGAATTGGAAGGGGATATGGGCGATAGCCAT
GTTGGCCTTCATGCGCGTTTGATGAGCCAGGCCCTGCGTAAGCTTACGGGCACGGTGGCGCGCTCCAATACTCTGATGAT
CTTCCTGAACCAGATCCGCCTGAAAATTGGCGTGATGTTTGGCAACCCGGAAACAACTACGGGTGGTAACGCCCTGAAGT
TCTATTCTTCCGTACGTATGGATATTCGCCGCATTGGGTCCATTAAAGACAAGGATGAGGCAACAGGTAACCAGACGCGC
GTAAAAGTTGTTAAAAACAAGATGGCGCCGCCTTTCCGTCAGGTAGAGTTTGATATCATGTATGGTGAAGGTATCAGTAA
GGTGGGCGAACTGATTGACCTTGGCGTAAAAGCCGGTGTTGTTGAAAAATCTGGCTCATGGTTTTCATACGATAGCCAGC
GTATTGGGCAGGGGCGTGAAAATGCCAAACAGTTCCTGCGTGACCATCCAGAAATGGCTGCGGATATCGAACGCCGCGTG
CGTGAACACGCAGGCGTTGTTGCAGAGGCCATGATGGTGGCGCCAGAACACCATGAAGGTGACTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(5-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

69.207

96.188

0.666
  recA Neisseria gonorrhoeae MS11

68.098

95.601

0.651
  recA Neisseria gonorrhoeae MS11

68.098

95.601

0.651
  recA Neisseria gonorrhoeae strain FA1090

68.098

95.601

0.651
  recA Pseudomonas stutzeri DSM 10701

65.868

97.947

0.645
  recA Glaesserella parasuis strain SC1401

68.339

93.548

0.639
  recA Vibrio cholerae strain A1552

64.201

99.12

0.636
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.201

99.12

0.636
  recA Acinetobacter baylyi ADP1

67.081

94.428

0.633
  recA Bacillus subtilis subsp. subtilis str. 168

66.154

95.308

0.631
  recA Acinetobacter baumannii D1279779

66.46

94.428

0.628
  recA Helicobacter pylori 26695

63.127

99.413

0.628
  recA Helicobacter pylori strain NCTC11637

62.832

99.413

0.625
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.463

100

0.625
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.609

95.894

0.61
  recA Streptococcus pyogenes NZ131

58.79

100

0.598
  recA Latilactobacillus sakei subsp. sakei 23K

62.462

95.308

0.595
  recA Streptococcus mutans UA159

60.542

97.361

0.589
  recA Streptococcus mitis SK321

60.303

96.774

0.584
  recA Streptococcus mitis NCTC 12261

60

96.774

0.581
  recA Streptococcus pneumoniae TIGR4

59.697

96.774

0.578
  recA Streptococcus pneumoniae R6

59.697

96.774

0.578
  recA Streptococcus pneumoniae Rx1

59.697

96.774

0.578
  recA Streptococcus pneumoniae D39

59.697

96.774

0.578
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.625

93.842

0.569
  recA Lactococcus lactis subsp. cremoris KW2

57.53

97.361

0.56

Multiple sequence alignment