Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LJ_RS03505 Genome accession   NC_005362
Coordinates   734670..735752 (+) Length   360 a.a.
NCBI ID   WP_004897730.1    Uniprot ID   A0A7D9N7K0
Organism   Lactobacillus johnsonii NCC 533     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 729670..740752
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJ_RS03485 (LJ0835) - 730872..732107 (+) 1236 WP_004897733.1 M16 family metallopeptidase -
  LJ_RS03490 (LJ0836) - 732108..732836 (+) 729 WP_011161757.1 elongation factor P 5-aminopentanone reductase -
  LJ_RS03495 (LJ0837) - 732895..733944 (+) 1050 WP_011161758.1 helix-turn-helix domain-containing protein -
  LJ_RS03500 (LJ0838) pgsA 733944..734507 (+) 564 WP_011161759.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LJ_RS03505 (LJ0839) recA 734670..735752 (+) 1083 WP_004897730.1 recombinase RecA Machinery gene
  LJ_RS03510 (LJ0840) rny 735879..737501 (+) 1623 WP_004897729.1 ribonuclease Y -
  LJ_RS03515 (LJ0841) - 737603..738745 (+) 1143 WP_011161760.1 glycosyltransferase family 4 protein -
  LJ_RS03520 (LJ0842) - 738763..739428 (-) 666 WP_011161761.1 YigZ family protein -
  LJ_RS03525 (LJ0843) - 739498..740739 (+) 1242 WP_250697990.1 DEAD/DEAH box helicase family protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 38987.46 Da        Isoelectric Point: 5.6252

>NTDB_id=23183 LJ_RS03505 WP_004897730.1 734670..735752(+) (recA) [Lactobacillus johnsonii NCC 533]
MAKDDKKKALDIALKKIEKDFGKGAVMRMGEKVDTQISTIPSGSLALDAALGVGGYPRGRIIEVYGPESSGKTTVALHAV
AEVQKRGGTAAYIDAENAMDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLIASGAIDILVVDSVAALVPRAEIDGDMG
DSHVGLQARLMSQALRKLSGNISKTKTIAVFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQGSDVIGN
RVKLKVVKNKVAPPFKVAEVDIMYGKGISQTGELIDMAADKDIIKKAGSWYSYGDDRIGQGRENAKQYLEEHPDVYEEVK
EKVREAYGIDAKAIEERENPEKVKQDKEVPVNKDASDEKK

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=23183 LJ_RS03505 WP_004897730.1 734670..735752(+) (recA) [Lactobacillus johnsonii NCC 533]
TTGGCTAAAGATGATAAAAAGAAGGCTTTAGACATTGCCTTAAAGAAGATTGAAAAAGACTTTGGAAAAGGCGCAGTGAT
GCGCATGGGTGAAAAAGTAGACACTCAAATTTCCACTATTCCTTCCGGTTCACTAGCTTTAGATGCAGCTCTTGGAGTTG
GTGGCTATCCTCGTGGACGAATTATTGAAGTATATGGACCAGAAAGTTCTGGTAAAACAACTGTGGCTCTTCATGCTGTT
GCAGAAGTTCAGAAGCGTGGAGGAACGGCAGCTTATATCGATGCGGAAAATGCGATGGATCCTGCTTATGCCGAAGCATT
AGGTGTTGATATTGATTCCTTAATTTTATCTCAACCAAACACTGGTGAAGAAGGTCTGCAAATTGCAGATACGCTTATTG
CGAGTGGTGCAATTGATATCTTAGTTGTGGATTCCGTGGCTGCGTTAGTACCAAGAGCCGAAATTGACGGTGACATGGGA
GATTCACATGTTGGTTTACAAGCCAGATTAATGAGTCAGGCTTTACGTAAACTCTCAGGAAATATCTCTAAAACTAAAAC
TATTGCTGTTTTCATTAACCAAATTCGTGAAAAAGTTGGGGTTATGTTTGGAAATCCAGAAACTACTCCTGGTGGACGTG
CTTTGAAGTTTTACTCTACGATTAGATTAGAAGTACGTAGAGCAGAACAAATTAAACAAGGATCAGACGTAATTGGTAAC
CGAGTTAAATTAAAGGTTGTAAAAAATAAAGTTGCTCCTCCATTTAAAGTGGCAGAAGTCGATATCATGTATGGGAAAGG
AATTTCTCAAACTGGTGAGTTAATTGATATGGCTGCTGATAAAGATATCATTAAGAAAGCTGGCTCGTGGTATTCATATG
GGGATGATCGCATTGGACAAGGCCGCGAGAATGCTAAGCAATATCTAGAAGAGCATCCTGATGTTTACGAAGAAGTAAAA
GAAAAAGTTCGTGAAGCTTATGGAATTGATGCTAAAGCAATTGAAGAACGAGAAAATCCTGAAAAGGTAAAACAGGACAA
GGAAGTACCAGTAAACAAAGATGCTTCCGATGAAAAAAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7D9N7K0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

76.602

99.722

0.764
  recA Bacillus subtilis subsp. subtilis str. 168

73.03

91.667

0.669
  recA Streptococcus pneumoniae D39

65.278

100

0.653
  recA Streptococcus pneumoniae R6

65.278

100

0.653
  recA Streptococcus pneumoniae TIGR4

65.278

100

0.653
  recA Streptococcus pneumoniae Rx1

65.278

100

0.653
  recA Streptococcus mutans UA159

66.011

98.889

0.653
  recA Streptococcus mitis NCTC 12261

66.571

96.389

0.642
  recA Streptococcus pyogenes NZ131

70.213

91.389

0.642
  recA Streptococcus mitis SK321

68.693

91.389

0.628
  recA Lactococcus lactis subsp. cremoris KW2

67.173

91.389

0.614
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.11

91.111

0.575
  recA Neisseria gonorrhoeae strain FA1090

61.261

92.5

0.567
  recA Neisseria gonorrhoeae MS11

61.261

92.5

0.567
  recA Neisseria gonorrhoeae MS11

61.261

92.5

0.567
  recA Acinetobacter baumannii D1279779

57.602

95

0.547
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.062

89.722

0.539
  recA Pseudomonas stutzeri DSM 10701

54.237

98.333

0.533
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.055

91.389

0.531
  recA Acinetobacter baylyi ADP1

59.317

89.444

0.531
  recA Helicobacter pylori 26695

58.589

90.556

0.531
  recA Helicobacter pylori strain NCTC11637

58.589

90.556

0.531
  recA Vibrio cholerae O1 biovar El Tor strain E7946

56.832

89.444

0.508
  recA Vibrio cholerae strain A1552

56.832

89.444

0.508
  recA Glaesserella parasuis strain SC1401

54.985

91.944

0.506
  recA Ralstonia pseudosolanacearum GMI1000

58.147

86.944

0.506

Multiple sequence alignment