Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | CDIF104451_RS06915 | Genome accession | NZ_CP021447 |
| Coordinates | 1420265..1421311 (+) | Length | 348 a.a. |
| NCBI ID | WP_003428218.1 | Uniprot ID | A0A031WFI0 |
| Organism | Clostridioides difficile strain DSM 104451 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1394208..1461484 | 1420265..1421311 | within | 0 |
Gene organization within MGE regions
Location: 1394208..1461484
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDIF104451_RS06800 (CDIF104451_01367) | rimP | 1396624..1397085 (+) | 462 | WP_003438303.1 | ribosome maturation factor RimP | - |
| CDIF104451_RS06805 (CDIF104451_01368) | nusA | 1397115..1398269 (+) | 1155 | WP_003428238.1 | transcription termination factor NusA | - |
| CDIF104451_RS06810 (CDIF104451_01369) | rnpM | 1398276..1398557 (+) | 282 | WP_003419469.1 | RNase P modulator RnpM | - |
| CDIF104451_RS06815 (CDIF104451_01370) | - | 1398547..1398858 (+) | 312 | WP_003419470.1 | L7Ae/L30e/S12e/Gadd45 family ribosomal protein | - |
| CDIF104451_RS06820 (CDIF104451_01371) | infB | 1398880..1400820 (+) | 1941 | WP_003438306.1 | translation initiation factor IF-2 | - |
| CDIF104451_RS06825 (CDIF104451_01372) | rbfA | 1400863..1401243 (+) | 381 | WP_003428234.1 | 30S ribosome-binding factor RbfA | - |
| CDIF104451_RS06830 (CDIF104451_01373) | - | 1401224..1401901 (+) | 678 | Protein_1255 | DHH family phosphoesterase | - |
| CDIF104451_RS06835 (CDIF104451_01374) | tnpB | 1402550..1403668 (+) | 1119 | WP_077707531.1 | IS200/IS605 family element RNA-guided endonuclease TnpB | - |
| CDIF104451_RS06840 (CDIF104451_01375) | - | 1403786..1404091 (+) | 306 | Protein_1257 | DHH family phosphoesterase | - |
| CDIF104451_RS06845 (CDIF104451_01376) | truB | 1404104..1405009 (+) | 906 | WP_003428232.1 | tRNA pseudouridine(55) synthase TruB | - |
| CDIF104451_RS06850 (CDIF104451_01377) | - | 1405140..1406069 (+) | 930 | WP_003438310.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| CDIF104451_RS06855 (CDIF104451_01378) | rpsO | 1406173..1406430 (+) | 258 | WP_003419491.1 | 30S ribosomal protein S15 | - |
| CDIF104451_RS06860 (CDIF104451_01379) | - | 1406670..1407515 (+) | 846 | WP_009889099.1 | DegV family protein | - |
| CDIF104451_RS06865 (CDIF104451_01380) | pnp | 1407640..1409751 (+) | 2112 | WP_003438316.1 | polyribonucleotide nucleotidyltransferase | - |
| CDIF104451_RS06870 (CDIF104451_01381) | - | 1410017..1410760 (+) | 744 | WP_003438319.1 | polysaccharide deacetylase family protein | - |
| CDIF104451_RS06875 (CDIF104451_01382) | - | 1410918..1412165 (+) | 1248 | WP_021423334.1 | M16 family metallopeptidase | - |
| CDIF104451_RS06880 (CDIF104451_01383) | - | 1412200..1412445 (+) | 246 | WP_003419503.1 | YlmC/YmxH family sporulation protein | - |
| CDIF104451_RS06885 (CDIF104451_01384) | dapG | 1412455..1413678 (+) | 1224 | WP_003438324.1 | aspartate kinase | - |
| CDIF104451_RS06890 (CDIF104451_01385) | - | 1413791..1414525 (+) | 735 | WP_003428224.1 | ClpP family protease | - |
| CDIF104451_RS06895 (CDIF104451_01386) | - | 1414648..1417059 (+) | 2412 | WP_003438328.1 | FtsK/SpoIIIE family DNA translocase | - |
| CDIF104451_RS06900 (CDIF104451_01387) | mnmH | 1417062..1418120 (+) | 1059 | WP_009902410.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| CDIF104451_RS06905 (CDIF104451_01388) | rimO | 1418114..1419448 (+) | 1335 | WP_003433320.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| CDIF104451_RS06910 (CDIF104451_01389) | pgsA | 1419435..1419977 (+) | 543 | WP_009889106.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| CDIF104451_RS06915 (CDIF104451_01390) | recA | 1420265..1421311 (+) | 1047 | WP_003428218.1 | recombinase RecA | Machinery gene |
| CDIF104451_RS06920 (CDIF104451_01391) | rny | 1421487..1423028 (+) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| CDIF104451_RS06925 (CDIF104451_01392) | - | 1423342..1425678 (+) | 2337 | WP_003438341.1 | diguanylate cyclase | - |
| CDIF104451_RS06930 (CDIF104451_01393) | - | 1426060..1427841 (+) | 1782 | WP_003438344.1 | UvrD-helicase domain-containing protein | - |
| CDIF104451_RS06935 (CDIF104451_01394) | lepB | 1427923..1428453 (-) | 531 | WP_009902411.1 | signal peptidase I | - |
| CDIF104451_RS06940 (CDIF104451_01395) | - | 1428493..1429317 (-) | 825 | WP_009905410.1 | undecaprenyl-diphosphate phosphatase | - |
| CDIF104451_RS06945 (CDIF104451_01396) | - | 1429574..1430482 (+) | 909 | WP_009889110.1 | tyrosine-type recombinase/integrase | - |
| CDIF104451_RS06950 (CDIF104451_01397) | purB | 1430626..1432071 (+) | 1446 | WP_009896234.1 | adenylosuccinate lyase | - |
| CDIF104451_RS06955 (CDIF104451_01398) | - | 1432383..1432835 (+) | 453 | WP_003419561.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| CDIF104451_RS06960 (CDIF104451_01399) | - | 1433247..1434824 (+) | 1578 | WP_021423335.1 | PTS transporter subunit EIIC | - |
| CDIF104451_RS06965 (CDIF104451_01400) | - | 1434972..1435724 (+) | 753 | WP_009892977.1 | MurR/RpiR family transcriptional regulator | - |
| CDIF104451_RS06970 (CDIF104451_01401) | - | 1435857..1437203 (+) | 1347 | WP_009902417.1 | 6-phospho-alpha-glucosidase | - |
| CDIF104451_RS06975 (CDIF104451_01402) | - | 1437315..1438511 (-) | 1197 | WP_003438357.1 | pyridoxal phosphate-dependent aminotransferase | - |
| CDIF104451_RS06980 (CDIF104451_01403) | galT | 1438896..1439846 (+) | 951 | WP_003438360.1 | galactose-1-phosphate uridylyltransferase | - |
| CDIF104451_RS06985 (CDIF104451_01404) | - | 1440007..1440759 (+) | 753 | WP_003438367.1 | exodeoxyribonuclease III | - |
| CDIF104451_RS06990 (CDIF104451_01405) | - | 1440851..1441627 (-) | 777 | WP_009896237.1 | 3'-5' exonuclease | - |
| CDIF104451_RS06995 (CDIF104451_01406) | - | 1441942..1443840 (+) | 1899 | WP_003428202.1 | glutamine synthetase | - |
| CDIF104451_RS07000 (CDIF104451_01407) | - | 1443968..1445089 (-) | 1122 | WP_003438374.1 | MGDG synthase family glycosyltransferase | - |
| CDIF104451_RS07005 (CDIF104451_01408) | - | 1445288..1445620 (+) | 333 | WP_009889116.1 | PadR family transcriptional regulator | - |
| CDIF104451_RS07010 (CDIF104451_01409) | - | 1445607..1446689 (+) | 1083 | WP_011861182.1 | DUF1700 domain-containing protein | - |
| CDIF104451_RS07015 (CDIF104451_01410) | - | 1446682..1447752 (+) | 1071 | WP_011861183.1 | DUF4097 family beta strand repeat-containing protein | - |
| CDIF104451_RS07020 (CDIF104451_01411) | - | 1447854..1448390 (+) | 537 | WP_003428196.1 | lipoprotein | - |
| CDIF104451_RS07025 (CDIF104451_01412) | - | 1448506..1449213 (+) | 708 | WP_009902422.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| CDIF104451_RS07030 (CDIF104451_01413) | - | 1449215..1449931 (+) | 717 | WP_009896246.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| CDIF104451_RS07035 (CDIF104451_01414) | - | 1449933..1450691 (+) | 759 | WP_009902423.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| CDIF104451_RS07040 (CDIF104451_01415) | - | 1450826..1452214 (+) | 1389 | WP_021360483.1 | two-component system sensor histidine kinase | - |
| CDIF104451_RS07045 (CDIF104451_01416) | - | 1452290..1453111 (-) | 822 | WP_009896253.1 | pyridoxamine kinase | - |
| CDIF104451_RS07050 (CDIF104451_01417) | - | 1453362..1454516 (+) | 1155 | WP_009892989.1 | amidase domain-containing protein | - |
| CDIF104451_RS07055 (CDIF104451_01418) | - | 1454699..1454899 (+) | 201 | WP_003419624.1 | cold-shock protein | - |
| CDIF104451_RS07060 (CDIF104451_01419) | - | 1455320..1455748 (+) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| CDIF104451_RS07065 (CDIF104451_01420) | - | 1455891..1456646 (-) | 756 | WP_009889131.1 | peptidylprolyl isomerase | - |
| CDIF104451_RS07070 (CDIF104451_01422) | - | 1457347..1457853 (-) | 507 | WP_003428186.1 | ImmA/IrrE family metallo-endopeptidase | - |
| CDIF104451_RS07075 (CDIF104451_01423) | - | 1457935..1458255 (-) | 321 | WP_003428185.1 | XRE family transcriptional regulator | - |
| CDIF104451_RS07080 (CDIF104451_01424) | - | 1458424..1458621 (+) | 198 | WP_003419641.1 | helix-turn-helix transcriptional regulator | - |
| CDIF104451_RS07085 (CDIF104451_01425) | - | 1458725..1459165 (+) | 441 | WP_003428183.1 | hypothetical protein | - |
| CDIF104451_RS07090 (CDIF104451_01426) | - | 1459414..1459857 (+) | 444 | WP_021414348.1 | phage tail terminator family protein | - |
| CDIF104451_RS07095 (CDIF104451_01427) | - | 1459862..1460926 (+) | 1065 | WP_021423336.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| CDIF104451_RS07100 (CDIF104451_01428) | - | 1460940..1461368 (+) | 429 | WP_003419646.1 | phage tail tube protein | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37377.68 Da Isoelectric Point: 4.8236
>NTDB_id=230830 CDIF104451_RS06915 WP_003428218.1 1420265..1421311(+) (recA) [Clostridioides difficile strain DSM 104451]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=230830 CDIF104451_RS06915 WP_003428218.1 1420265..1421311(+) (recA) [Clostridioides difficile strain DSM 104451]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
Similar proteins
Only experimentally validated proteins are listed.