Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   WS_RS07100 Genome accession   NC_005090
Coordinates   1429004..1430056 (+) Length   350 a.a.
NCBI ID   WP_011139329.1    Uniprot ID   Q7M8Q1
Organism   Wolinella succinogenes DSM 1740     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1424004..1435056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WS_RS07080 (WS1488) - 1425717..1426487 (-) 771 WP_011139325.1 UDP-N-acetylmuramate dehydrogenase -
  WS_RS07085 (WS1489) fliQ 1426497..1426763 (-) 267 WP_011139326.1 flagellar biosynthesis protein FliQ -
  WS_RS07090 (WS1491) - 1426951..1427976 (+) 1026 WP_408646039.1 cytochrome-c peroxidase -
  WS_RS07095 (WS1492) - 1428014..1428877 (-) 864 WP_011139328.1 menaquinone biosynthesis family protein -
  WS_RS07100 (WS1493) recA 1429004..1430056 (+) 1053 WP_011139329.1 recombinase RecA Machinery gene
  WS_RS07105 (WS1494) eno 1430066..1431334 (+) 1269 WP_011139330.1 phosphopyruvate hydratase -
  WS_RS07110 (WS1495) - 1431347..1431610 (+) 264 WP_011139331.1 hypothetical protein -
  WS_RS07115 (WS1496) - 1431612..1432238 (+) 627 WP_011139332.1 AMIN domain-containing protein -
  WS_RS07120 (WS1497) - 1432225..1432725 (+) 501 WP_011139333.1 shikimate kinase -
  WS_RS07125 (WS1498) - 1432793..1433644 (+) 852 WP_011139334.1 J domain-containing protein -
  WS_RS07130 (WS1499) - 1433630..1434439 (-) 810 WP_011139335.1 YihY family inner membrane protein -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 37737.14 Da        Isoelectric Point: 4.9821

>NTDB_id=23083 WS_RS07100 WP_011139329.1 1429004..1430056(+) (recA) [Wolinella succinogenes DSM 1740]
MALDENKRKAIDLAIKQIDKAFGKGALVRLGEKPVEKIDSISTGSLGLDIALGIGGIPQGRIIEIYGPESSGKTTLALQV
IAECQKKGGICAFIDAEHALDVSYAKRLGVDAENLLVSQPDYGEQALEILETLTRSGAVDLIVVDSVAALTPKSEIDGDM
GDQHVGLQARLMSQALRKVTGVLHKMNTTVIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDVRRIASLKQGEQHI
GNRVKAKVVKNKVAPPFREAEFDIMFGEGISQEGELIDYGVKLDIVDKSGSWLSYGDKKLGQGKENAKAFLKENKEIANE
IQAKIIGAIGSSDEITTFGDDEDESENLES

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=23083 WS_RS07100 WP_011139329.1 1429004..1430056(+) (recA) [Wolinella succinogenes DSM 1740]
ATGGCACTAGATGAGAACAAACGCAAAGCGATCGATCTAGCGATCAAACAGATTGACAAGGCCTTTGGCAAAGGCGCCCT
CGTGCGACTTGGCGAAAAACCCGTGGAAAAGATCGATTCGATTAGCACGGGCTCATTAGGGCTCGACATTGCCCTAGGAA
TCGGAGGAATCCCCCAAGGAAGAATCATCGAAATCTATGGACCTGAGAGCTCTGGAAAGACCACGCTCGCACTTCAAGTG
ATCGCTGAGTGTCAAAAAAAGGGCGGAATCTGCGCTTTTATCGATGCCGAGCACGCCCTAGATGTCTCCTACGCCAAACG
CCTTGGGGTGGATGCAGAGAATCTTCTTGTCTCCCAGCCTGATTATGGTGAACAGGCGTTAGAGATTCTAGAGACCCTCA
CACGAAGCGGAGCGGTCGATCTCATCGTGGTCGATTCGGTGGCTGCCCTCACCCCCAAAAGTGAAATTGATGGCGATATG
GGCGATCAACACGTAGGGCTCCAAGCACGCCTCATGAGCCAAGCCCTGCGAAAAGTCACGGGCGTGCTCCACAAGATGAA
CACCACCGTGATTTTCATCAACCAAATCCGTATGAAAATCGGAATGATGGGCTATGGAAGCCCTGAGACGACCACAGGCG
GAAATGCGCTCAAATTCTATGCTAGCGTGAGAATCGATGTAAGAAGAATCGCCTCCCTCAAACAGGGCGAACAGCACATT
GGGAATCGCGTCAAAGCCAAAGTGGTCAAAAACAAAGTCGCGCCCCCCTTTAGAGAAGCAGAATTTGACATTATGTTTGG
TGAGGGAATCAGCCAAGAAGGCGAGCTCATCGACTATGGCGTGAAACTGGACATTGTCGATAAGAGCGGCTCATGGCTCA
GTTATGGTGACAAAAAATTAGGTCAAGGCAAAGAGAATGCCAAAGCCTTTTTGAAAGAAAACAAAGAAATTGCAAATGAA
ATTCAGGCTAAAATTATCGGCGCCATCGGCTCAAGTGATGAAATCACTACTTTTGGGGACGATGAAGACGAATCAGAAAA
CCTAGAATCATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7M8Q1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Helicobacter pylori 26695

85.044

97.429

0.829
  recA Helicobacter pylori strain NCTC11637

84.457

97.429

0.823
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

77.193

97.714

0.754
  recA Neisseria gonorrhoeae MS11

63.793

99.429

0.634
  recA Neisseria gonorrhoeae MS11

63.793

99.429

0.634
  recA Neisseria gonorrhoeae strain FA1090

63.793

99.429

0.634
  recA Acinetobacter baylyi ADP1

63.143

100

0.631
  recA Bacillus subtilis subsp. subtilis str. 168

67.188

91.429

0.614
  recA Acinetobacter baumannii D1279779

66.254

92.286

0.611
  recA Glaesserella parasuis strain SC1401

60.87

98.571

0.6
  recA Pseudomonas stutzeri DSM 10701

65.015

92.286

0.6
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.222

94

0.594
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.087

92.286

0.591
  recA Vibrio cholerae strain A1552

64.087

92.286

0.591
  recA Ralstonia pseudosolanacearum GMI1000

66.558

88

0.586
  recA Lactococcus lactis subsp. cremoris KW2

59.639

94.857

0.566
  recA Streptococcus pneumoniae R6

59.819

94.571

0.566
  recA Streptococcus pneumoniae Rx1

59.819

94.571

0.566
  recA Streptococcus pneumoniae D39

59.819

94.571

0.566
  recA Streptococcus pneumoniae TIGR4

59.819

94.571

0.566
  recA Latilactobacillus sakei subsp. sakei 23K

58.859

95.143

0.56
  recA Streptococcus mitis NCTC 12261

60.372

92.286

0.557
  recA Streptococcus pyogenes NZ131

60

92.857

0.557
  recA Streptococcus mitis SK321

60.062

92.286

0.554
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.509

93.143

0.554
  recA Streptococcus mutans UA159

59.692

92.857

0.554

Multiple sequence alignment