Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CV_RS07865 Genome accession   NC_005085
Coordinates   1733775..1734827 (-) Length   350 a.a.
NCBI ID   WP_011135159.1    Uniprot ID   -
Organism   Chromobacterium violaceum ATCC 12472     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1728775..1739827
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CV_RS07845 (CV1603) - 1729560..1730042 (-) 483 WP_011135155.1 GNAT family N-acetyltransferase -
  CV_RS07850 (CV1604) alaS 1730157..1732790 (-) 2634 WP_011135156.1 alanine--tRNA ligase -
  CV_RS07855 (CV1605) - 1732855..1733313 (-) 459 WP_011135157.1 SRPBCC domain-containing protein -
  CV_RS07860 (CV1606) recX 1733317..1733775 (-) 459 WP_011135158.1 recombination regulator RecX -
  CV_RS07865 (CV1607) recA 1733775..1734827 (-) 1053 WP_011135159.1 recombinase RecA Machinery gene
  CV_RS07870 (CV1608) hrcA 1734984..1736006 (+) 1023 WP_043595811.1 heat-inducible transcriptional repressor HrcA -
  CV_RS07875 (CV1609) mltB 1736038..1737078 (+) 1041 WP_011135161.1 lytic murein transglycosylase B -
  CV_RS07880 (CV1610) dnaX 1737175..1739094 (+) 1920 WP_011135162.1 DNA polymerase III subunit gamma/tau -
  CV_RS07885 (CV1611) - 1739100..1739438 (+) 339 WP_043595814.1 YbaB/EbfC family nucleoid-associated protein -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 37815.07 Da        Isoelectric Point: 4.8741

>NTDB_id=23061 CV_RS07865 WP_011135159.1 1733775..1734827(-) (recA) [Chromobacterium violaceum ATCC 12472]
MASEDKSKALAAALAQIEKQFGKGSIMRMSDNQITENLQVISTGSLTLDLALGVGGLPRGRVVEIYGPESSGKTTLCLQA
VAEAQKLGGTCAYIDAENALDPVYAQKLGVNVEDLLISQPDTGEQALEICDMLVRSSGVDVIVVDSVAALVPKAEIEGEM
GDSHVGLQARLMSQALRKLTGNIKRTNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGGIKKGDEVIG
NDTRVKVVKNKVSPPFRQADFEILYGEGISRQGEIIELGVKHGFIDKSGAWYAYNGQKIGQGKDNTREWLKANPAIADEI
ERKIREAVGVKIEINENQGDEEFADDAFDA

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=23061 CV_RS07865 WP_011135159.1 1733775..1734827(-) (recA) [Chromobacterium violaceum ATCC 12472]
ATGGCTTCCGAAGACAAGAGCAAGGCGCTGGCCGCTGCCCTGGCCCAGATTGAAAAGCAATTTGGCAAGGGCTCGATCAT
GCGCATGAGCGACAACCAGATCACCGAAAACCTGCAAGTGATCTCCACCGGCTCGCTGACCCTGGACCTGGCGCTGGGCG
TCGGCGGCCTGCCGCGCGGCCGCGTGGTCGAAATCTACGGCCCGGAGTCGTCGGGTAAAACCACCTTGTGTCTGCAGGCC
GTGGCCGAGGCGCAAAAACTGGGCGGCACCTGCGCCTACATCGACGCCGAAAACGCGCTGGACCCGGTTTACGCGCAGAA
GCTGGGCGTCAACGTCGAAGACCTGCTGATCTCGCAGCCGGACACCGGCGAGCAGGCGCTGGAAATCTGCGACATGCTGG
TTCGCTCCAGCGGCGTGGACGTGATCGTGGTCGACTCCGTCGCCGCGCTGGTGCCCAAGGCTGAAATCGAGGGCGAGATG
GGCGACAGCCACGTCGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCTGCGCAAGCTGACCGGCAACATCAAGCGCACCAA
CACCCTGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAACCCGGAAACCACCACCGGCGGCA
ACGCGCTGAAGTTCTACGCCTCCGTGCGCCTGGACATCCGCCGCACCGGCGGCATCAAGAAGGGCGACGAAGTGATCGGC
AACGACACTCGCGTCAAAGTGGTGAAGAACAAGGTGTCCCCGCCGTTCCGCCAGGCCGATTTCGAAATCCTGTACGGCGA
GGGCATCTCGCGCCAGGGCGAAATCATCGAGCTGGGCGTCAAGCACGGCTTCATCGACAAGTCCGGCGCCTGGTACGCGT
ACAACGGCCAGAAGATCGGCCAGGGCAAGGACAACACCCGCGAATGGCTGAAAGCCAACCCGGCCATCGCCGACGAGATC
GAGCGCAAGATCCGCGAAGCGGTGGGCGTGAAGATCGAAATCAACGAAAACCAGGGCGACGAAGAGTTCGCCGACGACGC
CTTCGACGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae MS11

78.171

96.857

0.757
  recA Neisseria gonorrhoeae strain FA1090

78.171

96.857

0.757
  recA Neisseria gonorrhoeae MS11

78.171

96.857

0.757
  recA Ralstonia pseudosolanacearum GMI1000

78.344

89.714

0.703
  recA Pseudomonas stutzeri DSM 10701

75.776

92

0.697
  recA Glaesserella parasuis strain SC1401

72.783

93.429

0.68
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72

92.857

0.669
  recA Vibrio cholerae strain A1552

72

92.857

0.669
  recA Acinetobacter baylyi ADP1

69.817

93.714

0.654
  recA Acinetobacter baumannii D1279779

69.969

92.286

0.646
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.072

95.429

0.611
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.537

96.857

0.606
  recA Helicobacter pylori strain NCTC11637

63.554

94.857

0.603
  recA Helicobacter pylori 26695

63.554

94.857

0.603
  recA Bacillus subtilis subsp. subtilis str. 168

64.11

93.143

0.597
  recA Latilactobacillus sakei subsp. sakei 23K

63.03

94.286

0.594
  recA Streptococcus mutans UA159

59.13

98.571

0.583
  recA Streptococcus pneumoniae R6

57.183

100

0.58
  recA Streptococcus pneumoniae Rx1

57.183

100

0.58
  recA Streptococcus pneumoniae D39

57.183

100

0.58
  recA Streptococcus pneumoniae TIGR4

57.183

100

0.58
  recA Streptococcus mitis NCTC 12261

58.892

98

0.577
  recA Streptococcus pyogenes NZ131

60

94.286

0.566
  recA Lactococcus lactis subsp. cremoris KW2

60

94.286

0.566
  recA Streptococcus mitis SK321

59.091

94.286

0.557
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.927

93.714

0.543

Multiple sequence alignment