Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   TX50_RS08365 Genome accession   NC_005072
Coordinates   1490458..1491570 (+) Length   370 a.a.
NCBI ID   WP_011133190.1    Uniprot ID   -
Organism   Prochlorococcus marinus subsp. pastoris str. CCMP1986     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1485458..1496570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TX50_RS08330 (PMM1556) - 1486034..1486336 (-) 303 WP_011133184.1 50S ribosomal protein L23 -
  TX50_RS08335 (PMM1557) rplD 1486333..1486965 (-) 633 WP_011133185.1 50S ribosomal protein L4 -
  TX50_RS08340 (PMM1558) rplC 1486962..1487615 (-) 654 WP_011133186.1 50S ribosomal protein L3 -
  TX50_RS08345 (PMM1559) ndhN 1487908..1488378 (+) 471 WP_011133187.1 NAD(P)H-quinone oxidoreductase subunit N -
  TX50_RS08350 (PMM1560) - 1488368..1489378 (+) 1011 WP_011133188.1 LdpA C-terminal domain-containing domain -
  TX50_RS08360 (PMM1561) - 1489572..1490348 (+) 777 WP_011133189.1 HAD family hydrolase -
  TX50_RS08365 (PMM1562) recA 1490458..1491570 (+) 1113 WP_011133190.1 recombinase RecA Machinery gene
  TX50_RS08370 (PMM1563) - 1491573..1491818 (-) 246 WP_011133191.1 DUF2839 domain-containing protein -
  TX50_RS08375 (PMM1564) - 1491846..1493294 (-) 1449 WP_011133192.1 DNA helicase -
  TX50_RS08380 (PMM1565) - 1493388..1494227 (+) 840 WP_011133193.1 prephenate/arogenate dehydrogenase -
  TX50_RS08385 (PMM1566) crtD 1494234..1495739 (-) 1506 WP_011133194.1 C-3',4' desaturase CrtD -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 40164.90 Da        Isoelectric Point: 7.2482

>NTDB_id=23050 TX50_RS08365 WP_011133190.1 1490458..1491570(+) (recA) [Prochlorococcus marinus subsp. pastoris str. CCMP1986]
MSLEERRKKDSKESSSEEKNKALNLVLGQIERNFGRGSIMRLGDASRMKVETISTGALTLDLALGGGYPKGRVVEVYGPE
SSGKTTLTLHAIAEVQKNGGIAAFVDAEHALDPVYAASLGVDVENLLVSQPDTGEMALEIVDQLIRSTAVDLVVVDSVAA
LTPRAEIEGEMGDHVIGSQARLMSQAMRKITGNIGKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRRI
QTLKRGTEEYGIRAKVKVAKNKVAPPFRIAEFDILFGKGISTTGCLLDLAEETNIIIRRGAWYSYEGENIGQGRDNTIIW
LDQNLEIKNKVESIVKTKLTEGTEVSSNSMKALNNNPENDVIANNIKKIA

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=23050 TX50_RS08365 WP_011133190.1 1490458..1491570(+) (recA) [Prochlorococcus marinus subsp. pastoris str. CCMP1986]
ATGAGTTTAGAAGAAAGAAGAAAAAAGGATTCAAAGGAATCCTCATCTGAAGAGAAAAACAAAGCATTAAATCTAGTCTT
AGGACAAATAGAAAGAAACTTTGGCAGAGGATCAATAATGAGGCTTGGAGATGCCTCCAGAATGAAAGTAGAAACAATAT
CTACAGGAGCTCTTACATTAGACTTAGCATTAGGAGGGGGATATCCAAAGGGAAGAGTGGTTGAAGTTTACGGACCTGAA
AGTTCAGGGAAAACAACCCTAACTCTTCACGCAATAGCAGAAGTACAGAAAAATGGAGGAATAGCAGCATTTGTTGATGC
TGAACATGCTTTAGATCCAGTCTATGCGGCTTCTCTAGGAGTGGATGTCGAAAATTTACTAGTTTCGCAGCCAGATACAG
GTGAAATGGCTTTAGAAATAGTTGATCAACTCATAAGGTCAACTGCCGTAGACCTTGTTGTTGTTGACTCAGTAGCAGCA
TTAACTCCTAGAGCAGAAATAGAAGGTGAAATGGGAGATCACGTTATAGGAAGCCAAGCAAGACTAATGAGTCAAGCAAT
GAGAAAAATAACTGGTAATATTGGCAAATCAGGATGTACAGTGATATTCCTCAATCAATTACGCTTAAAAATCGGAGTTA
CATATGGAAATCCAGAGACAACTACAGGAGGTAATGCATTAAAGTTTTATGCTTCAGTAAGACTTGACATTAGGAGAATT
CAGACTCTTAAAAGAGGTACAGAAGAATATGGAATAAGAGCAAAAGTTAAAGTAGCAAAAAATAAAGTAGCCCCTCCATT
TAGAATTGCAGAGTTTGATATTCTATTCGGCAAAGGAATAAGTACGACAGGATGTTTATTAGATTTAGCAGAAGAGACTA
ATATAATAATTAGGAGAGGTGCTTGGTATAGTTACGAAGGAGAAAACATTGGACAAGGAAGAGATAACACAATTATTTGG
TTGGATCAGAACTTAGAAATAAAGAATAAAGTAGAATCTATTGTCAAAACGAAACTAACAGAAGGTACTGAAGTAAGTTC
TAATTCGATGAAAGCATTAAATAATAATCCAGAAAATGATGTGATTGCTAATAACATCAAAAAAATAGCTTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

63.526

88.919

0.565
  recA Acinetobacter baylyi ADP1

64.506

87.568

0.565
  recA Glaesserella parasuis strain SC1401

58.974

94.865

0.559
  recA Neisseria gonorrhoeae MS11

60.534

91.081

0.551
  recA Neisseria gonorrhoeae MS11

60.534

91.081

0.551
  recA Neisseria gonorrhoeae strain FA1090

60.534

91.081

0.551
  recA Pseudomonas stutzeri DSM 10701

62.654

87.568

0.549
  recA Streptococcus pneumoniae Rx1

56.338

95.946

0.541
  recA Streptococcus pneumoniae D39

56.338

95.946

0.541
  recA Streptococcus pneumoniae R6

56.338

95.946

0.541
  recA Streptococcus pneumoniae TIGR4

56.338

95.946

0.541
  recA Ralstonia pseudosolanacearum GMI1000

63.987

84.054

0.538
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.111

87.568

0.535
  recA Vibrio cholerae strain A1552

61.111

87.568

0.535
  recA Helicobacter pylori strain NCTC11637

59.517

89.459

0.532
  recA Helicobacter pylori 26695

59.517

89.459

0.532
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.859

90

0.53
  recA Streptococcus mitis NCTC 12261

57.396

91.351

0.524
  recA Streptococcus mitis SK321

57.101

91.351

0.522
  recA Bacillus subtilis subsp. subtilis str. 168

61.415

84.054

0.516
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.769

87.838

0.516
  recA Streptococcus mutans UA159

57.927

88.649

0.514
  recA Lactococcus lactis subsp. cremoris KW2

56.25

90.811

0.511
  recA Latilactobacillus sakei subsp. sakei 23K

59.119

85.946

0.508
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.896

91.081

0.5
  recA Streptococcus pyogenes NZ131

56.402

88.649

0.5

Multiple sequence alignment