Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RB_RS24610 Genome accession   NC_005027
Coordinates   6387411..6388538 (-) Length   375 a.a.
NCBI ID   WP_011123464.1    Uniprot ID   Q7UJJ0
Organism   Rhodopirellula baltica SH     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6382411..6393538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RB_RS24580 (RB11853) folE 6382558..6383190 (+) 633 WP_390174937.1 GTP cyclohydrolase I FolE -
  RB_RS28665 (RB11854) - 6383171..6383344 (-) 174 WP_390175315.1 hypothetical protein -
  RB_RS28670 - 6383287..6383499 (-) 213 WP_390175317.1 DUF1589 domain-containing protein -
  RB_RS28675 (RB11855) - 6383460..6383705 (-) 246 WP_390175319.1 hypothetical protein -
  RB_RS28680 - 6383704..6383760 (-) 57 Protein_4613 hypothetical protein -
  RB_RS28410 - 6383735..6383860 (-) 126 Protein_4614 DUF1589 domain-containing protein -
  RB_RS24595 (RB11856) - 6383865..6385799 (-) 1935 WP_011123461.1 cation acetate symporter -
  RB_RS24600 (RB11857) - 6385796..6386101 (-) 306 WP_007331648.1 DUF485 domain-containing protein -
  RB_RS24605 (RB11859) - 6386309..6387160 (-) 852 WP_011123462.1 MBL fold metallo-hydrolase -
  RB_RS24610 (RB11863) recA 6387411..6388538 (-) 1128 WP_011123464.1 recombinase RecA Machinery gene
  RB_RS24615 (RB11868) - 6388940..6389662 (-) 723 WP_164922466.1 hypothetical protein -
  RB_RS24620 (RB11870) - 6390113..6391042 (+) 930 WP_007326889.1 HDOD domain-containing protein -
  RB_RS24625 (RB11875) - 6391226..6392338 (+) 1113 WP_231845953.1 phosphotransferase -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 39958.91 Da        Isoelectric Point: 5.5690

>NTDB_id=23010 RB_RS24610 WP_011123464.1 6387411..6388538(-) (recA) [Rhodopirellula baltica SH]
MVKKPRMATPAASKGVKLDPGMKTILEKEPGLKTTLQQIEKSFGDGAIMPLGASQKLTIDCISTGSLSLDMALGGKGIPR
GRIIEVFGPESSGKTTLALHIGAEAQKSGGIAAIIDAEHAFDPSWAKKLGVELDSLLVSQPSSGEEAMQICEMLVKSNAV
DVIIIDSVAALVPKAELEGEIGDSHVGLQARLMSQSMRKLTGAIAKSKSAVVFINQIREKVGVMFGSPETTPGGRALKFY
CSCRIDVRRIGSLKDGEEQVGQRVKAKIVKNKVAPPFRIAEFDMMHSNGISFEGDLLDLGTENKVVNRSGSWFKYGDTYL
GQGKEKARNFLIENPDVSDEIKQKVLAAGGFVAPLEVDADESEEAVEDGEAVANS

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=23010 RB_RS24610 WP_011123464.1 6387411..6388538(-) (recA) [Rhodopirellula baltica SH]
ATGGTAAAGAAACCACGCATGGCAACGCCCGCAGCATCCAAGGGCGTCAAGCTGGATCCAGGGATGAAGACCATTCTGGA
AAAAGAACCCGGTCTGAAGACGACGCTTCAACAGATCGAAAAATCGTTTGGCGACGGTGCGATCATGCCGCTGGGAGCAT
CCCAAAAGCTGACCATCGATTGTATCTCCACAGGCAGCCTCAGCCTCGACATGGCTCTGGGTGGAAAGGGCATCCCGCGA
GGCCGAATCATCGAAGTCTTCGGACCGGAATCTTCCGGTAAGACGACGTTGGCTCTGCACATCGGTGCCGAAGCTCAAAA
GTCTGGCGGGATCGCGGCAATCATCGATGCCGAGCATGCCTTTGACCCCAGTTGGGCCAAGAAGCTGGGCGTTGAACTGG
ACAGCCTGCTGGTCAGCCAACCCAGCAGCGGTGAAGAGGCGATGCAGATCTGCGAGATGCTAGTCAAATCCAACGCTGTC
GACGTCATCATCATCGACTCCGTCGCGGCCTTGGTGCCCAAGGCGGAACTCGAAGGCGAGATTGGCGACAGCCACGTGGG
CCTGCAAGCTCGTTTGATGAGCCAGTCGATGCGGAAGCTGACCGGTGCGATCGCCAAAAGCAAATCGGCCGTCGTCTTCA
TCAACCAGATCCGCGAAAAGGTCGGCGTGATGTTCGGCAGTCCCGAAACCACACCCGGCGGTCGTGCCCTCAAATTCTAT
TGCTCGTGCCGAATCGATGTTCGTCGGATTGGCAGCCTGAAGGACGGCGAAGAGCAAGTCGGTCAACGCGTCAAAGCCAA
GATCGTCAAGAACAAGGTCGCACCTCCGTTCCGCATCGCTGAATTTGACATGATGCACTCCAATGGCATCAGTTTCGAAG
GAGATTTGCTGGATCTGGGAACCGAGAACAAGGTCGTCAACCGCAGCGGTTCCTGGTTCAAGTACGGCGACACTTATCTG
GGACAAGGCAAAGAGAAGGCTCGCAACTTCTTGATCGAGAACCCCGACGTCTCCGATGAGATCAAGCAAAAGGTCTTGGC
AGCCGGCGGCTTTGTCGCGCCGCTTGAAGTGGACGCCGACGAGAGTGAAGAAGCAGTCGAAGACGGAGAAGCCGTCGCCA
ACAGCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(32-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7UJJ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae MS11

58.683

89.067

0.523
  recA Neisseria gonorrhoeae strain FA1090

58.683

89.067

0.523
  recA Neisseria gonorrhoeae MS11

58.683

89.067

0.523
  recA Lactococcus lactis subsp. cremoris KW2

58.16

89.867

0.523
  recA Bacillus subtilis subsp. subtilis str. 168

61.129

85.067

0.52
  recA Streptococcus mitis SK321

51.316

100

0.52
  recA Streptococcus mitis NCTC 12261

51.613

99.2

0.512
  recA Pseudomonas stutzeri DSM 10701

58.438

85.333

0.499
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.994

85.067

0.493
  recA Glaesserella parasuis strain SC1401

57.994

85.067

0.493
  recA Latilactobacillus sakei subsp. sakei 23K

56.923

86.667

0.493
  recA Streptococcus pneumoniae Rx1

53.959

90.933

0.491
  recA Streptococcus pneumoniae D39

53.959

90.933

0.491
  recA Streptococcus pneumoniae R6

53.959

90.933

0.491
  recA Streptococcus pneumoniae TIGR4

53.959

90.933

0.491
  recA Helicobacter pylori 26695

56.875

85.333

0.485
  recA Ralstonia pseudosolanacearum GMI1000

59.283

81.867

0.485
  recA Helicobacter pylori strain NCTC11637

56.563

85.333

0.483
  recA Vibrio cholerae O1 biovar El Tor strain E7946

56.918

84.8

0.483
  recA Vibrio cholerae strain A1552

56.918

84.8

0.483
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.728

86.133

0.48
  recA Streptococcus pyogenes NZ131

54.799

86.133

0.472
  recA Streptococcus mutans UA159

53.333

88

0.469
  recA Acinetobacter baylyi ADP1

55.556

84

0.467
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

53.846

86.667

0.467
  recA Acinetobacter baumannii D1279779

54.717

84.8

0.464

Multiple sequence alignment