Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HH_RS03140 Genome accession   NC_004917
Coordinates   611572..612609 (-) Length   345 a.a.
NCBI ID   WP_011115475.1    Uniprot ID   A0A4U8STA0
Organism   Helicobacter hepaticus ATCC 51449     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 606572..617609
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HH_RS03110 (HH0627) - 607483..608577 (-) 1095 WP_011115469.1 DegT/DnrJ/EryC1/StrS family aminotransferase -
  HH_RS03115 (HH0628) - 608630..609133 (-) 504 WP_011115470.1 shikimate kinase -
  HH_RS03120 (HH0629) - 609136..609753 (-) 618 WP_011115471.1 AMIN domain-containing protein -
  HH_RS03125 (HH0630) - 609750..610016 (-) 267 WP_011115472.1 hypothetical protein -
  HH_RS03130 (HH0631) eno 610031..611308 (-) 1278 WP_011115473.1 phosphopyruvate hydratase -
  HH_RS03135 (HH0632) - 611335..611550 (-) 216 WP_138091868.1 hypothetical protein -
  HH_RS03140 (HH0633) recA 611572..612609 (-) 1038 WP_011115475.1 recombinase RecA Machinery gene
  HH_RS03145 (HH0634) - 612710..613567 (+) 858 WP_011115476.1 menaquinone biosynthesis family protein -
  HH_RS03150 (HH0635) - 613577..614644 (-) 1068 WP_011115477.1 AI-2E family transporter -
  HH_RS03155 (HH0636) - 614897..616189 (+) 1293 WP_011115478.1 O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase family protein -
  HH_RS03160 (HH0637) metA 616198..617079 (+) 882 WP_011115479.1 homoserine O-succinyltransferase -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37575.17 Da        Isoelectric Point: 5.5608

>NTDB_id=23000 HH_RS03140 WP_011115475.1 611572..612609(-) (recA) [Helicobacter hepaticus ATCC 51449]
MVDEKRQKAIELALKQIDKAFGKGALVRLGDKQVEKIDSISTGSLGLDMALGIGGVPKGRIIEIYGPESSGKTTLSLQIV
AECQRNGGICAFIDAEHALDVYYAKRLGVDTENLLVSQPDTGEQALEILETLTRSGAVDLIVIDSVAALTPKAEIEGDMG
DQHVGLQARLMSHALRKITGVLHKMNATLIFINQIRMKIGTMGYGSPETTTGGNALKFYASVRIDVRRVATLKQNDQQIG
NRTKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGIKLDIIDKSGAWLSYNDKKLGQGRENAKIVLKENKSLADEI
TAKIKEQIGSKDEILPLPDEPETDE

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=23000 HH_RS03140 WP_011115475.1 611572..612609(-) (recA) [Helicobacter hepaticus ATCC 51449]
ATGGTAGATGAAAAAAGGCAAAAAGCGATTGAACTTGCTTTAAAGCAAATTGATAAAGCATTTGGTAAAGGTGCTTTGGT
GCGTTTGGGTGATAAGCAAGTTGAAAAAATTGATAGTATTTCTACGGGTTCACTTGGACTTGATATGGCACTTGGAATCG
GTGGTGTGCCTAAGGGAAGGATTATTGAGATTTATGGTCCAGAATCCAGCGGTAAAACAACACTTAGCTTACAAATTGTA
GCAGAATGTCAAAGAAACGGGGGAATTTGTGCCTTTATTGATGCCGAACACGCTCTTGATGTATATTATGCCAAGCGTTT
GGGTGTGGATACAGAGAATCTTCTTGTATCTCAACCTGACACAGGTGAGCAGGCTCTTGAAATTTTAGAAACCCTTACAC
GTAGTGGTGCAGTGGATTTAATAGTGATTGATTCGGTAGCAGCGCTCACTCCTAAGGCAGAAATTGAAGGAGATATGGGA
GATCAGCACGTAGGGCTTCAAGCACGACTTATGAGTCACGCATTGCGCAAAATTACAGGCGTGCTTCACAAGATGAATGC
AACATTAATTTTTATTAACCAAATTCGTATGAAAATTGGCACTATGGGGTATGGTAGTCCAGAGACAACTACGGGCGGTA
ATGCACTCAAGTTTTATGCAAGTGTGCGTATTGATGTGCGCCGTGTTGCTACACTTAAGCAAAATGACCAGCAAATTGGT
AATCGCACAAAAGCAAAAGTTGTAAAAAATAAGGTTGCCCCACCTTTCCGCGAAGCAGAATTTGATATTATGTTTGGTGA
GGGGATTAGTAAGGAAGGTGAAATTATTGACTATGGTATCAAGCTTGATATTATTGATAAAAGCGGTGCGTGGTTAAGCT
ATAATGATAAAAAGCTTGGACAAGGGCGTGAGAATGCTAAAATTGTTTTAAAAGAAAACAAATCTCTTGCTGATGAGATT
ACAGCTAAAATTAAAGAGCAAATTGGCTCAAAGGACGAGATTTTACCTTTGCCTGATGAACCAGAAACTGATGAGTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4U8STA0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Helicobacter pylori 26695

88.824

98.551

0.875
  recA Helicobacter pylori strain NCTC11637

88.529

98.551

0.872
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

77.744

95.072

0.739
  recA Neisseria gonorrhoeae MS11

66.258

94.493

0.626
  recA Neisseria gonorrhoeae MS11

66.258

94.493

0.626
  recA Neisseria gonorrhoeae strain FA1090

66.258

94.493

0.626
  recA Bacillus subtilis subsp. subtilis str. 168

66.049

93.913

0.62
  recA Acinetobacter baumannii D1279779

61.739

100

0.617
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.687

97.101

0.609
  recA Acinetobacter baylyi ADP1

63.636

95.652

0.609
  recA Ralstonia pseudosolanacearum GMI1000

66.773

90.725

0.606
  recA Pseudomonas stutzeri DSM 10701

63.609

94.783

0.603
  recA Glaesserella parasuis strain SC1401

62.385

94.783

0.591
  recA Vibrio cholerae strain A1552

62.385

94.783

0.591
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.385

94.783

0.591
  recA Streptococcus pneumoniae TIGR4

56.818

100

0.58
  recA Streptococcus pneumoniae Rx1

56.818

100

0.58
  recA Streptococcus pneumoniae D39

56.818

100

0.58
  recA Streptococcus pneumoniae R6

56.818

100

0.58
  recA Lactococcus lactis subsp. cremoris KW2

59.76

96.522

0.577
  recA Streptococcus pyogenes NZ131

59.697

95.652

0.571
  recA Streptococcus mitis NCTC 12261

59.878

95.362

0.571
  recA Streptococcus mitis SK321

59.574

95.362

0.568
  recA Latilactobacillus sakei subsp. sakei 23K

56.232

100

0.562
  recA Streptococcus mutans UA159

58.788

95.652

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.748

94.493

0.536

Multiple sequence alignment