Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | CDIF101085_RS06355 | Genome accession | NZ_CP021319 |
| Coordinates | 1324788..1325834 (+) | Length | 348 a.a. |
| NCBI ID | WP_003419530.1 | Uniprot ID | A0AAX3GVV5 |
| Organism | Clostridioides difficile strain DSM 101085 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1319998..1370610 | 1324788..1325834 | within | 0 |
Gene organization within MGE regions
Location: 1319998..1370610
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDIF101085_RS06340 (CDIF101085_01298) | mnmH | 1321606..1322664 (+) | 1059 | WP_003419524.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| CDIF101085_RS06345 (CDIF101085_01299) | rimO | 1322658..1323992 (+) | 1335 | WP_003419527.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| CDIF101085_RS06350 (CDIF101085_01300) | pgsA | 1323979..1324521 (+) | 543 | WP_009905407.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| CDIF101085_RS06355 (CDIF101085_01301) | recA | 1324788..1325834 (+) | 1047 | WP_003419530.1 | recombinase RecA | Machinery gene |
| CDIF101085_RS06360 (CDIF101085_01302) | rny | 1326010..1327551 (+) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| CDIF101085_RS06365 (CDIF101085_01303) | - | 1327861..1330197 (+) | 2337 | WP_022615961.1 | diguanylate cyclase | - |
| CDIF101085_RS06370 | - | 1331003..1331101 (+) | 99 | Protein_1167 | transposase | - |
| CDIF101085_RS06375 (CDIF101085_01304) | tnpB | 1331103..1332221 (+) | 1119 | WP_196612436.1 | IS200/IS605 family element RNA-guided endonuclease TnpB | - |
| CDIF101085_RS06380 (CDIF101085_01305) | - | 1332553..1334334 (+) | 1782 | WP_003419546.1 | UvrD-helicase domain-containing protein | - |
| CDIF101085_RS06385 (CDIF101085_01306) | lepB | 1334414..1334944 (-) | 531 | WP_009905409.1 | signal peptidase I | - |
| CDIF101085_RS06390 (CDIF101085_01307) | - | 1334984..1335808 (-) | 825 | WP_009905410.1 | undecaprenyl-diphosphate phosphatase | - |
| CDIF101085_RS06395 (CDIF101085_01308) | - | 1336065..1336976 (+) | 912 | WP_022615208.1 | tyrosine-type recombinase/integrase | - |
| CDIF101085_RS06400 (CDIF101085_01309) | purB | 1337115..1338560 (+) | 1446 | WP_003419557.1 | adenylosuccinate lyase | - |
| CDIF101085_RS06405 (CDIF101085_01310) | - | 1338861..1339313 (+) | 453 | WP_003419561.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| CDIF101085_RS06410 (CDIF101085_01311) | - | 1339532..1340728 (-) | 1197 | WP_022615962.1 | pyridoxal phosphate-dependent aminotransferase | - |
| CDIF101085_RS06415 (CDIF101085_01312) | galT | 1341113..1342063 (+) | 951 | WP_003419573.1 | galactose-1-phosphate uridylyltransferase | - |
| CDIF101085_RS06420 (CDIF101085_01313) | - | 1342184..1342936 (+) | 753 | WP_003419575.1 | exodeoxyribonuclease III | - |
| CDIF101085_RS06425 (CDIF101085_01314) | - | 1343028..1343804 (-) | 777 | WP_003419578.1 | 3'-5' exonuclease | - |
| CDIF101085_RS06430 (CDIF101085_01315) | - | 1344119..1346017 (+) | 1899 | WP_003419583.1 | glutamine synthetase | - |
| CDIF101085_RS06435 (CDIF101085_01316) | - | 1346145..1347266 (-) | 1122 | WP_003419591.1 | MGDG synthase family glycosyltransferase | - |
| CDIF101085_RS06440 (CDIF101085_01317) | - | 1347465..1347797 (+) | 333 | WP_009905416.1 | PadR family transcriptional regulator | - |
| CDIF101085_RS06445 (CDIF101085_01318) | - | 1347784..1348842 (+) | 1059 | WP_003419595.1 | DUF1700 domain-containing protein | - |
| CDIF101085_RS06450 (CDIF101085_01319) | - | 1348835..1349905 (+) | 1071 | WP_022615963.1 | DUF4097 family beta strand repeat-containing protein | - |
| CDIF101085_RS06455 (CDIF101085_01320) | - | 1350007..1350543 (+) | 537 | WP_003419598.1 | hypothetical protein | - |
| CDIF101085_RS06460 (CDIF101085_01321) | - | 1350663..1351370 (+) | 708 | WP_022615964.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| CDIF101085_RS06465 (CDIF101085_01322) | - | 1351372..1352091 (+) | 720 | WP_003419603.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| CDIF101085_RS06470 (CDIF101085_01323) | - | 1352093..1352863 (+) | 771 | WP_003419609.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| CDIF101085_RS06475 (CDIF101085_01324) | - | 1352997..1354388 (+) | 1392 | WP_029158131.1 | sensor histidine kinase | - |
| CDIF101085_RS06480 (CDIF101085_01325) | - | 1354464..1355285 (-) | 822 | WP_003419615.1 | pyridoxamine kinase | - |
| CDIF101085_RS06485 (CDIF101085_01326) | - | 1355536..1356690 (+) | 1155 | WP_009905420.1 | amidase domain-containing protein | - |
| CDIF101085_RS06490 (CDIF101085_01327) | - | 1356873..1357073 (+) | 201 | WP_003419624.1 | cold-shock protein | - |
| CDIF101085_RS06495 (CDIF101085_01328) | - | 1357494..1357922 (+) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| CDIF101085_RS06500 (CDIF101085_01329) | - | 1358065..1358820 (-) | 756 | WP_022615965.1 | peptidylprolyl isomerase | - |
| CDIF101085_RS06505 (CDIF101085_01331) | - | 1359521..1360027 (-) | 507 | WP_003419636.1 | ImmA/IrrE family metallo-endopeptidase | - |
| CDIF101085_RS06510 (CDIF101085_01332) | - | 1360109..1360429 (-) | 321 | WP_003419639.1 | XRE family transcriptional regulator | - |
| CDIF101085_RS06515 (CDIF101085_01333) | - | 1360598..1360795 (+) | 198 | WP_003419641.1 | helix-turn-helix transcriptional regulator | - |
| CDIF101085_RS06520 (CDIF101085_01334) | - | 1360899..1361339 (+) | 441 | WP_003419643.1 | hypothetical protein | - |
| CDIF101085_RS06525 (CDIF101085_01335) | - | 1361588..1362031 (+) | 444 | WP_003419644.1 | phage tail terminator family protein | - |
| CDIF101085_RS06530 (CDIF101085_01336) | - | 1362036..1363100 (+) | 1065 | WP_022615966.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| CDIF101085_RS06535 (CDIF101085_01337) | - | 1363114..1363542 (+) | 429 | WP_003419646.1 | phage tail tube protein | - |
| CDIF101085_RS06540 (CDIF101085_01338) | - | 1363656..1364102 (+) | 447 | WP_003419647.1 | phage tail assembly chaperone | - |
| CDIF101085_RS06545 (CDIF101085_01339) | - | 1364296..1366749 (+) | 2454 | WP_003419649.1 | hypothetical protein | - |
| CDIF101085_RS06550 (CDIF101085_01340) | - | 1366749..1367171 (+) | 423 | WP_003419651.1 | phage baseplate protein | - |
| CDIF101085_RS19720 (CDIF101085_01341) | - | 1367357..1368981 (+) | 1625 | Protein_1204 | XkdQ/YqbQ family protein | - |
| CDIF101085_RS06560 (CDIF101085_01343) | - | 1368997..1369323 (+) | 327 | WP_003419655.1 | DUF2577 family protein | - |
| CDIF101085_RS06565 (CDIF101085_01344) | - | 1369323..1369751 (+) | 429 | WP_003419656.1 | DUF2634 domain-containing protein | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37387.68 Da Isoelectric Point: 4.8236
>NTDB_id=229764 CDIF101085_RS06355 WP_003419530.1 1324788..1325834(+) (recA) [Clostridioides difficile strain DSM 101085]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTNEI
DEKVRAFYNLNEEHEEAGNSVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTNEI
DEKVRAFYNLNEEHEEAGNSVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=229764 CDIF101085_RS06355 WP_003419530.1 1324788..1325834(+) (recA) [Clostridioides difficile strain DSM 101085]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGATATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCACTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATACGCAAAAGC
TTTGGGCGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGACTCTCACGTAGGGTTACAAGCTAGACTTATGTCGCAAGCTCTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCATTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGACACAATAAAACAAGGAGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTCGTTAAAAATAAAGTAGCACCTCCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTCTAGATATAGCTGCTGATGTAGATATAGTAAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAGGATAATTTAGATTTAACTAATGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAAGCAGGTAATTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGATATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCACTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATACGCAAAAGC
TTTGGGCGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGACTCTCACGTAGGGTTACAAGCTAGACTTATGTCGCAAGCTCTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCATTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGACACAATAAAACAAGGAGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTCGTTAAAAATAAAGTAGCACCTCCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTCTAGATATAGCTGCTGATGTAGATATAGTAAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAGGATAATTTAGATTTAACTAATGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAAGCAGGTAATTCAGTATCAAAAGAAATTGTAGA
AGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.