Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CA264_RS19745 Genome accession   NZ_CP021235
Coordinates   4546526..4547572 (-) Length   348 a.a.
NCBI ID   WP_025609126.1    Uniprot ID   A0A1X9YWZ0
Organism   Pontibacter actiniarum strain DSM 19842     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4541526..4552572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA264_RS19720 (CA264_19670) - 4541588..4542568 (+) 981 WP_025609121.1 NAD(P)H-quinone oxidoreductase -
  CA264_RS19725 (CA264_19675) - 4542662..4543372 (-) 711 WP_025609122.1 RluA family pseudouridine synthase -
  CA264_RS19730 (CA264_19680) - 4543558..4544598 (-) 1041 WP_025609123.1 sensor histidine kinase -
  CA264_RS19735 (CA264_19685) - 4544602..4545291 (-) 690 WP_025609124.1 response regulator transcription factor -
  CA264_RS19740 (CA264_19690) - 4545539..4546348 (-) 810 WP_025609125.1 DUF3108 domain-containing protein -
  CA264_RS19745 (CA264_19695) recA 4546526..4547572 (-) 1047 WP_025609126.1 recombinase RecA Machinery gene
  CA264_RS19750 (CA264_19700) - 4547733..4548884 (+) 1152 WP_237151144.1 hypothetical protein -
  CA264_RS19755 (CA264_19705) - 4548910..4549542 (-) 633 WP_025609128.1 GNAT family N-acetyltransferase -
  CA264_RS19760 (CA264_19710) - 4549706..4550569 (+) 864 WP_025609129.1 SDR family NAD(P)-dependent oxidoreductase -
  CA264_RS19765 (CA264_19715) - 4550655..4551083 (-) 429 WP_025609130.1 hypothetical protein -
  CA264_RS19770 (CA264_19720) - 4551215..4552180 (-) 966 WP_025609131.1 AAA family ATPase -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37343.97 Da        Isoelectric Point: 5.3362

>NTDB_id=229076 CA264_RS19745 WP_025609126.1 4546526..4547572(-) (recA) [Pontibacter actiniarum strain DSM 19842]
MSVSNEKLKALQLTMDKLDKTYGKGTVMKLSDNKVEDIPAISTGSLGLDIALGIGGLPRGRVVEIYGPESSGKTTLTMHC
IAEAQRKGGLAAFIDAEHAFDRVYAQKLGIDTENLLISQPDNGEQALEIADHLIRSGAIDIIVIDSVAALVPKGELEGDM
GDSKMGLQARLMSQALRKLTGTINKTGCTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRIGQIKESADNIT
GNRTRVKVVKNKVAPPFKVVEFDIMYGEGISKVGEVLDLGVELGIVQKSGSWFSYNGDKLGQGRDGVKQILLDNPELMEE
IEGKIRAIVKGEPEKVAAALDDAAAAAE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=229076 CA264_RS19745 WP_025609126.1 4546526..4547572(-) (recA) [Pontibacter actiniarum strain DSM 19842]
ATGAGCGTAAGCAACGAAAAACTGAAGGCCCTGCAGCTGACCATGGACAAGCTCGATAAAACTTACGGTAAAGGCACCGT
AATGAAACTGAGCGACAACAAGGTAGAGGACATTCCTGCTATCTCTACTGGTTCACTGGGTCTGGACATTGCTTTGGGTA
TCGGCGGTTTGCCACGCGGCCGTGTCGTAGAAATCTACGGTCCTGAGTCATCTGGTAAAACCACGCTTACCATGCACTGC
ATTGCCGAGGCGCAACGCAAAGGCGGTTTAGCGGCGTTTATAGATGCAGAGCACGCATTCGACCGGGTATACGCCCAAAA
GTTAGGCATAGATACAGAAAACCTATTGATATCCCAGCCAGACAACGGGGAGCAGGCGCTTGAAATCGCTGACCACCTGA
TCCGCTCTGGCGCTATTGATATTATTGTAATTGACTCCGTGGCCGCCCTGGTACCGAAAGGTGAGCTGGAAGGCGACATG
GGCGACAGCAAGATGGGTCTGCAGGCACGTCTGATGTCGCAGGCGCTGCGCAAGCTGACAGGTACGATCAACAAAACAGG
ATGTACCTGTATCTTCATTAACCAGCTGCGTGAGAAAATCGGTGTGATGTTCGGTAACCCGGAAACCACCACTGGCGGTA
ACGCACTGAAGTTCTACGCGTCTGTTCGCCTGGATATCCGCCGCATTGGCCAGATCAAGGAGAGCGCAGACAACATTACC
GGTAACCGCACACGCGTGAAGGTGGTAAAAAACAAGGTAGCCCCTCCGTTTAAGGTAGTAGAGTTCGACATCATGTATGG
CGAGGGCATCTCTAAAGTAGGCGAGGTGCTTGACCTGGGCGTTGAGCTGGGTATTGTGCAGAAGTCAGGTTCATGGTTCT
CCTACAACGGCGACAAGCTGGGCCAGGGCCGTGACGGCGTGAAGCAGATCCTGCTGGACAACCCGGAGCTGATGGAAGAG
ATCGAAGGAAAAATCAGAGCCATCGTAAAAGGCGAGCCGGAGAAAGTGGCCGCCGCCCTGGACGATGCCGCTGCTGCAGC
CGAATGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X9YWZ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

72.424

94.828

0.687
  recA Ralstonia pseudosolanacearum GMI1000

67.692

93.391

0.632
  recA Acinetobacter baylyi ADP1

63.235

97.701

0.618
  recA Acinetobacter baumannii D1279779

66.25

91.954

0.609
  recA Glaesserella parasuis strain SC1401

63.473

95.977

0.609
  recA Neisseria gonorrhoeae MS11

64.526

93.966

0.606
  recA Neisseria gonorrhoeae MS11

64.526

93.966

0.606
  recA Neisseria gonorrhoeae strain FA1090

64.526

93.966

0.606
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.176

97.701

0.598
  recA Vibrio cholerae strain A1552

61.176

97.701

0.598
  recA Bacillus subtilis subsp. subtilis str. 168

64.286

92.529

0.595
  recA Helicobacter pylori strain NCTC11637

63.303

93.966

0.595
  recA Pseudomonas stutzeri DSM 10701

64.486

92.241

0.595
  recA Helicobacter pylori 26695

62.997

93.966

0.592
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.769

93.391

0.586
  recA Streptococcus mitis NCTC 12261

56.647

99.425

0.563
  recA Streptococcus pyogenes NZ131

59.692

93.391

0.557
  recA Lactococcus lactis subsp. cremoris KW2

59.692

93.391

0.557
  recA Latilactobacillus sakei subsp. sakei 23K

59.443

92.816

0.552
  recA Streptococcus mutans UA159

59.077

93.391

0.552
  recA Streptococcus mitis SK321

58.642

93.103

0.546
  recA Streptococcus pneumoniae D39

57.846

93.391

0.54
  recA Streptococcus pneumoniae TIGR4

57.846

93.391

0.54
  recA Streptococcus pneumoniae R6

57.846

93.391

0.54
  recA Streptococcus pneumoniae Rx1

57.846

93.391

0.54
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.657

93.966

0.523

Multiple sequence alignment