Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   B9D94_RS10165 Genome accession   NZ_CP020866
Coordinates   1822789..1823850 (+) Length   353 a.a.
NCBI ID   WP_006211253.1    Uniprot ID   W4ASU6
Organism   Paenibacillus sp. Cedars     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1817789..1828850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9D94_RS10140 (B9D94_10190) - 1818411..1819370 (+) 960 WP_148246940.1 helix-turn-helix domain-containing protein -
  B9D94_RS10145 (B9D94_10195) - 1819448..1819621 (+) 174 WP_138917807.1 DUF4175 domain-containing protein -
  B9D94_RS10150 (B9D94_10200) - 1819773..1820264 (+) 492 WP_006211256.1 YajQ family cyclic di-GMP-binding protein -
  B9D94_RS10155 (B9D94_10205) pgsA 1820533..1821120 (+) 588 WP_006211255.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  B9D94_RS10160 (B9D94_10210) - 1821235..1822497 (+) 1263 WP_063480008.1 competence/damage-inducible protein A -
  B9D94_RS10165 (B9D94_10215) recA 1822789..1823850 (+) 1062 WP_006211253.1 recombinase RecA Machinery gene
  B9D94_RS10170 (B9D94_10220) - 1823991..1824728 (+) 738 WP_148246941.1 regulatory protein RecX -
  B9D94_RS10175 (B9D94_10225) rny 1825092..1826633 (+) 1542 WP_036642458.1 ribonuclease Y -
  B9D94_RS10180 (B9D94_10230) - 1826765..1827568 (+) 804 WP_036642117.1 TIGR00282 family metallophosphoesterase -
  B9D94_RS10185 (B9D94_10235) - 1827698..1827958 (+) 261 WP_006211249.1 stage V sporulation protein S -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 38178.49 Da        Isoelectric Point: 4.9231

>NTDB_id=226648 B9D94_RS10165 WP_006211253.1 1822789..1823850(+) (recA) [Paenibacillus sp. Cedars]
MSDRRAALEMALRQIEKQFGKGSIMKLGESTHMQVEIVPSGSLALDIALGTGGLPKGRIIEVYGPESSGKTTVALHAIAE
VQKAGGQAAFIDAEHALDPSYASKLGVNIDELLLSQPDTGEQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTITIFINQLREKVGVMFGNPETTPGGRALKFYSTVRLDVRRIESIKMGNDVVGNRT
RIKVVKNKVAPPFKQAELDIMYGEGISREGSLIDIGTELDIVDKSGAWYSYSGDRLGQGRENAKQFLKEHPEIASVIENK
IREASNLTTAVPEPSAEDKEQDEIEEQELFKVE

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=226648 B9D94_RS10165 WP_006211253.1 1822789..1823850(+) (recA) [Paenibacillus sp. Cedars]
TTGTCAGATCGTCGTGCTGCGCTGGAGATGGCGCTTCGTCAGATAGAGAAACAGTTCGGTAAAGGTTCCATCATGAAACT
GGGTGAGTCCACCCATATGCAGGTAGAGATTGTGCCAAGTGGATCGTTGGCGTTGGATATAGCTTTAGGAACCGGCGGTT
TGCCTAAAGGCCGGATTATTGAAGTATATGGACCGGAATCCTCCGGTAAAACAACAGTAGCCCTCCATGCTATTGCTGAA
GTTCAGAAGGCTGGCGGACAAGCTGCATTTATCGATGCCGAGCATGCCCTGGATCCATCGTATGCAAGCAAACTGGGTGT
TAATATTGATGAATTGCTGCTCTCCCAACCGGATACGGGTGAACAGGGGCTTGAAATTGCGGAAGCATTGGTACGCAGTG
GTGCTGTAGATATTATTGTTATTGACTCGGTTGCTGCGCTTGTGCCGAAAGCTGAAATTGAAGGCGATATGGGTGATTCC
CACGTGGGTCTGCAAGCTCGTCTGATGTCTCAGGCTCTTCGTAAATTGTCGGGTGCCATCAATAAGTCGAAAACGATTAC
CATCTTTATCAACCAGCTTCGTGAGAAGGTTGGTGTTATGTTCGGTAACCCTGAGACTACTCCGGGCGGACGTGCTCTGA
AGTTCTATTCCACGGTTCGTTTGGACGTGCGCCGGATTGAGAGCATCAAGATGGGTAACGATGTGGTGGGTAACCGCACA
CGGATTAAGGTTGTTAAGAACAAGGTAGCGCCGCCTTTCAAACAGGCTGAGCTAGATATTATGTACGGTGAGGGCATCTC
TAGAGAGGGAAGCCTGATTGATATCGGAACGGAACTGGATATCGTAGACAAGAGTGGTGCGTGGTATTCTTATTCTGGCG
ACCGTCTGGGTCAAGGACGTGAGAATGCGAAGCAATTCTTGAAGGAGCATCCGGAAATCGCGAGTGTAATCGAGAATAAA
ATCCGTGAAGCAAGCAACCTGACCACGGCTGTTCCTGAGCCTTCCGCAGAGGATAAGGAACAAGATGAAATAGAAGAGCA
GGAATTGTTTAAGGTAGAGTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB W4ASU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

82.569

92.635

0.765
  recA Latilactobacillus sakei subsp. sakei 23K

71.261

96.601

0.688
  recA Streptococcus pneumoniae D39

67.139

100

0.671
  recA Streptococcus pneumoniae Rx1

67.139

100

0.671
  recA Streptococcus pneumoniae R6

67.139

100

0.671
  recA Streptococcus pneumoniae TIGR4

67.139

100

0.671
  recA Streptococcus mitis SK321

67.147

98.3

0.66
  recA Streptococcus mutans UA159

65.537

100

0.657
  recA Streptococcus pyogenes NZ131

70.062

91.785

0.643
  recA Streptococcus mitis NCTC 12261

69.846

92.068

0.643
  recA Lactococcus lactis subsp. cremoris KW2

67.576

93.484

0.632
  recA Neisseria gonorrhoeae MS11

63.478

97.734

0.62
  recA Neisseria gonorrhoeae MS11

63.478

97.734

0.62
  recA Neisseria gonorrhoeae strain FA1090

63.478

97.734

0.62
  recA Ralstonia pseudosolanacearum GMI1000

66.159

92.918

0.615
  recA Vibrio cholerae strain A1552

67.29

90.935

0.612
  recA Vibrio cholerae O1 biovar El Tor strain E7946

67.29

90.935

0.612
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.573

96.884

0.606
  recA Acinetobacter baylyi ADP1

61.919

97.45

0.603
  recA Acinetobacter baumannii D1279779

61.696

96.884

0.598
  recA Glaesserella parasuis strain SC1401

61.159

97.734

0.598
  recA Pseudomonas stutzeri DSM 10701

62.13

95.751

0.595
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.609

92.635

0.589
  recA Helicobacter pylori 26695

62.539

91.501

0.572
  recA Helicobacter pylori strain NCTC11637

62.229

91.501

0.569
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.991

91.501

0.558

Multiple sequence alignment