Detailed information NTG0022646

Bioinformatically predicted

Overview

• Name: recA
• Type: Machinery gene
• Locus tag: PD_RS00505
• Genome accession: NC_004556
• Coordinates: 117832..118875 (+)
• Length: 347 a.a.
• NCBI ID: WP_004087616.1
• Uniprot ID: Q87F44
• Organism: Xylella fastidiosa Temecula1
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 112832..123875

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PD_RS00490 (PD0090)	-	113437..114465 (-)	1029	WP_004087619.1	right-handed parallel beta-helix repeat-containing protein	-
PD_RS00495 (PD0091)	-	115511..116542 (+)	1032	WP_011097498.1	NAD(P)H-dependent flavin oxidoreductase	-
PD_RS00500 (PD0092)	lexA	117015..117650 (+)	636	WP_004087617.1	transcriptional repressor LexA	-
PD_RS00505 (PD0093)	recA	117832..118875 (+)	1044	WP_004087616.1	recombinase RecA	Machinery gene
PD_RS00510 (PD0094)	alaS	119363..122017 (+)	2655	WP_004087615.1	alanine--tRNA ligase	-
PD_RS00515 (PD0095)	csrA	122156..122371 (+)	216	WP_004085529.1	carbon storage regulator CsrA	-

Sequence

Protein

• Length: 347 a.a.
• Molecular weight: 37656.32 Da
• Isoelectric Point: 5.0879

>NTDB_id=22646 PD_RS00505 WP_004087616.1 117832..118875(+) (recA) [Xylella fastidiosa Temecula1]
MDENKKRALSVALSQIEKQFGKGSVMRMGDRVIEAVEAIPTGSLMLDLALGIGGLPKGRVVEIYGPESSGKTTLTLQAIA
QCQKRGGTAAFIDAEHALDPIYAGKLGVNVDDLLLSQPDTGEQALEIADMLVRSGSIDIMVIDSVAALTPRAEIEGEMGD
QLPGLQARLMSQALRKLTGNIKRSNTLVIFINQLRMKIGIMMPGQSPETTTGGNALKFYASVRLDIRRIGAIKKGDEIIG
NQTKIKVVKNKLAPPFKQVVTEILYGEGISREGELIEMGVEAKLVEKAGAWYSYGGERIGQGKDNARGYLRENPHFAAKL
EADLREKFEPTELSREEGDEDTLEDAM

Nucleotide

• Length: 1044 bp

>NTDB_id=22646 PD_RS00505 WP_004087616.1 117832..118875(+) (recA) [Xylella fastidiosa Temecula1]
ATGGATGAGAACAAGAAACGCGCCCTTTCTGTCGCTTTAAGCCAGATTGAAAAACAGTTCGGCAAGGGGTCCGTGATGCG
GATGGGCGATCGCGTGATCGAAGCCGTAGAGGCGATCCCGACAGGTTCGCTCATGTTGGATCTGGCCCTGGGGATAGGTG
GTTTGCCAAAGGGACGTGTCGTGGAAATCTATGGGCCGGAATCTTCTGGGAAGACCACATTGACTTTGCAGGCGATCGCT
CAATGCCAGAAGAGGGGAGGTACAGCAGCGTTCATTGATGCTGAGCATGCCTTGGATCCGATTTATGCGGGCAAGTTAGG
CGTCAATGTTGATGATTTGTTGTTGTCTCAGCCAGATACTGGGGAGCAGGCTCTGGAAATCGCTGACATGCTGGTGCGCT
CGGGGTCGATCGATATCATGGTTATTGATTCGGTTGCGGCACTCACGCCAAGGGCGGAGATTGAGGGTGAGATGGGAGAT
CAGTTGCCCGGTCTTCAGGCGCGATTGATGAGCCAGGCGCTGCGTAAATTGACCGGCAATATCAAGCGCTCTAATACGCT
GGTGATTTTTATCAACCAGTTGCGTATGAAAATTGGGATCATGATGCCGGGTCAAAGCCCTGAAACTACGACAGGGGGTA
ATGCGCTGAAGTTCTATGCTTCTGTGCGTTTGGATATTCGCCGTATTGGCGCGATCAAGAAAGGTGACGAAATTATCGGG
AATCAAACCAAAATCAAGGTTGTTAAAAACAAGTTGGCGCCTCCCTTCAAACAAGTCGTGACTGAGATTCTCTATGGTGA
AGGCATCAGTCGTGAAGGGGAATTGATTGAAATGGGCGTGGAGGCCAAGTTGGTTGAGAAAGCCGGCGCTTGGTATAGCT
ATGGTGGTGAGCGGATCGGGCAAGGAAAAGATAATGCGCGTGGCTATCTACGCGAAAACCCGCATTTTGCGGCCAAGCTT
GAGGCTGATTTGCGTGAGAAATTTGAGCCGACCGAGCTTTCTCGAGAAGAGGGCGATGAAGATACGCTCGAAGATGCAAT
GTAA

Domains

Predicted by InterproScan.

• recA bacterial DNA recombination protein (RecA) (7-270)

3D structure

• AlphaFold DB: Q87F44

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recA	Acinetobacter baylyi ADP1	70.145	99.424	0.697
recA	Ralstonia pseudosolanacearum GMI1000	72.727	95.101	0.692
recA	Acinetobacter baumannii D1279779	71.601	95.389	0.683
recA	Pseudomonas stutzeri DSM 10701	71.646	94.524	0.677
recA	Vibrio cholerae O1 biovar El Tor strain E7946	70.245	93.948	0.66
recA	Vibrio cholerae strain A1552	70.245	93.948	0.66
recA	Neisseria gonorrhoeae strain FA1090	66.082	98.559	0.651
recA	Neisseria gonorrhoeae MS11	66.082	98.559	0.651
recA	Neisseria gonorrhoeae MS11	66.082	98.559	0.651
recA	Glaesserella parasuis strain SC1401	68.111	93.084	0.634
recA	Helicobacter pylori strain NCTC11637	61.446	95.677	0.588
recA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	63.438	92.219	0.585
recA	Latilactobacillus sakei subsp. sakei 23K	59.184	98.847	0.585
recA	Riemerella anatipestifer ATCC 11845 = DSM 15868	60.778	96.254	0.585
recA	Helicobacter pylori 26695	60.843	95.677	0.582
recA	Bacillus subtilis subsp. subtilis str. 168	61.538	93.66	0.576
recA	Streptococcus pneumoniae D39	60.366	94.524	0.571
recA	Streptococcus pneumoniae Rx1	60.366	94.524	0.571
recA	Streptococcus pneumoniae R6	60.366	94.524	0.571
recA	Streptococcus pneumoniae TIGR4	60.366	94.524	0.571
recA	Streptococcus mutans UA159	60	95.101	0.571
recA	Streptococcus pyogenes NZ131	59.394	95.101	0.565
recA	Streptococcus mitis SK321	59.756	94.524	0.565
recA	Streptococcus mitis NCTC 12261	59.451	94.524	0.562
recA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	59.202	93.948	0.556
recA	Lactococcus lactis subsp. cremoris KW2	58.154	93.66	0.545