Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ECA_RS16655 Genome accession   NC_004547
Coordinates   3785644..3786717 (-) Length   357 a.a.
NCBI ID   WP_011094881.1    Uniprot ID   -
Organism   Pectobacterium atrosepticum SCRI1043     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3780644..3791717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECA_RS16640 (ECA3366) csrA 3781840..3782025 (-) 186 WP_005972168.1 carbon storage regulator CsrA -
  ECA_RS16645 (ECA3367) alaS 3782345..3784972 (-) 2628 WP_011094879.1 alanine--tRNA ligase -
  ECA_RS16650 (ECA3368) recX 3785110..3785598 (-) 489 WP_011094880.1 recombination regulator RecX -
  ECA_RS16655 (ECA3369) recA 3785644..3786717 (-) 1074 WP_011094881.1 recombinase RecA Machinery gene
  ECA_RS16660 (ECA3370) pncC 3786825..3787319 (-) 495 WP_011094882.1 nicotinamide-nucleotide amidase -
  ECA_RS16665 (ECA3371) - 3787555..3787890 (-) 336 WP_011094883.1 hypothetical protein -
  ECA_RS16670 (ECA3372) - 3788371..3788859 (+) 489 WP_011094884.1 SRPBCC family protein -
  ECA_RS16675 (ECA3373) - 3788942..3789616 (+) 675 WP_011094885.1 MarC family NAAT transporter -
  ECA_RS16680 (ECA3374) - 3789808..3791406 (+) 1599 WP_011094886.1 sensor domain-containing diguanylate cyclase -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 38283.86 Da        Isoelectric Point: 5.3354

>NTDB_id=22625 ECA_RS16655 WP_011094881.1 3785644..3786717(-) (recA) [Pectobacterium atrosepticum SCRI1043]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVG
SETRVKVVKNKVAAPFKQAEFQILYGEGINIHGELVDLGVKHKLIEKAGAWYSYNGDKIGQGKANACNFLKENPTISAEL
DKKLREMLLHKGNELKPAAAGNSHDEDELAGEGKEEF

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=22625 ECA_RS16655 WP_011094881.1 3785644..3786717(-) (recA) [Pectobacterium atrosepticum SCRI1043]
ATGGCTATTGATGAGAACAAACAAAAGGCACTTGCGGCAGCACTGGGCCAAATCGAAAAGCAATTTGGTAAAGGTTCTAT
CATGCGGTTGGGCGAAGATCGCTCAATGGATGTTGAAACCATTTCTACAGGTTCTTTGTCCCTTGATATTGCTTTAGGTG
CCGGCGGTTTACCTATGGGCCGCATCGTTGAGATTTATGGCCCAGAATCCTCTGGTAAAACCACGCTGACCTTACAGGTG
ATTGCTGCTGCTCAGCGCGAAGGCAAAACCTGTGCGTTTATCGATGCTGAACATGCGTTGGACCCTATTTATGCGAAAAA
ACTTGGTGTAGATATTGATAATCTGCTGTGTTCGCAGCCGGATACCGGCGAGCAGGCGTTGGAGATTTGTGATGCACTAA
CGCGCTCTGGTGCTGTTGACGTTATTATCGTCGACTCCGTTGCAGCGCTGACGCCGAAAGCTGAAATTGAAGGCGAAATC
GGTGACTCTCACATGGGGCTGGCTGCACGTATGATGAGCCAGGCTATGCGTAAATTGGCGGGTAACCTGAAGCAAGCTAA
TACGCTGCTGATCTTCATCAACCAGATCCGTATGAAAATTGGTGTGATGTTTGGTAACCCTGAAACCACTACCGGCGGTA
ACGCACTGAAGTTTTATGCCTCTGTTCGTTTGGATATTCGTCGTACTGGCGCTATCAAGGAAGGCGAAGAAGTCGTCGGT
AGCGAAACCCGCGTTAAAGTCGTGAAGAATAAAGTGGCAGCACCGTTCAAGCAGGCTGAATTCCAAATTTTGTACGGCGA
AGGCATCAATATCCACGGTGAGCTGGTTGATCTGGGTGTGAAACACAAGCTGATCGAAAAAGCGGGTGCCTGGTATAGCT
ATAACGGTGACAAGATCGGTCAGGGTAAAGCGAATGCCTGTAATTTCCTGAAAGAGAATCCGACGATTTCTGCTGAACTG
GATAAGAAATTGCGCGAAATGCTGCTGCATAAAGGCAATGAGCTGAAACCGGCTGCCGCGGGAAATAGCCATGACGAGGA
TGAACTCGCTGGTGAAGGTAAAGAAGAGTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

82.535

99.44

0.821
  recA Vibrio cholerae strain A1552

82.535

99.44

0.821
  recA Pseudomonas stutzeri DSM 10701

76.147

91.597

0.697
  recA Acinetobacter baylyi ADP1

70.809

96.919

0.686
  recA Glaesserella parasuis strain SC1401

68.272

98.88

0.675
  recA Acinetobacter baumannii D1279779

72.424

92.437

0.669
  recA Neisseria gonorrhoeae MS11

69.939

91.317

0.639
  recA Neisseria gonorrhoeae MS11

69.939

91.317

0.639
  recA Neisseria gonorrhoeae strain FA1090

69.939

91.317

0.639
  recA Ralstonia pseudosolanacearum GMI1000

70.096

87.115

0.611
  recA Streptococcus pneumoniae Rx1

60.87

96.639

0.588
  recA Streptococcus pneumoniae R6

60.87

96.639

0.588
  recA Streptococcus pneumoniae TIGR4

60.87

96.639

0.588
  recA Streptococcus pneumoniae D39

60.87

96.639

0.588
  recA Helicobacter pylori strain NCTC11637

62.385

91.597

0.571
  recA Helicobacter pylori 26695

61.702

92.157

0.569
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.774

91.597

0.566
  recA Streptococcus mitis NCTC 12261

62.539

90.476

0.566
  recA Streptococcus mitis SK321

62.539

90.476

0.566
  recA Streptococcus mutans UA159

62.154

91.036

0.566
  recA Streptococcus pyogenes NZ131

62.154

91.036

0.566
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60

93.838

0.563
  recA Lactococcus lactis subsp. cremoris KW2

62.229

90.476

0.563
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

89.916

0.56
  recA Latilactobacillus sakei subsp. sakei 23K

61.231

91.036

0.557
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.589

91.317

0.535

Multiple sequence alignment