Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   B5P37_RS10610 Genome accession   NZ_CP020773
Coordinates   2281928..2282971 (+) Length   347 a.a.
NCBI ID   WP_085238183.1    Uniprot ID   A0AAC9RSN5
Organism   Staphylococcus lutrae strain ATCC 700373     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2276928..2287971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B5P37_RS10585 (B5P37_10585) - 2277777..2278481 (+) 705 WP_085238179.1 SDR family oxidoreductase -
  B5P37_RS10590 (B5P37_10590) - 2278534..2279382 (+) 849 WP_085238180.1 YmfK family protein -
  B5P37_RS10595 (B5P37_10595) - 2279397..2279792 (+) 396 WP_085238470.1 helix-turn-helix domain-containing protein -
  B5P37_RS10600 (B5P37_10600) pgsA 2279833..2280420 (+) 588 WP_085238181.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  B5P37_RS10605 (B5P37_10605) - 2280614..2281789 (+) 1176 WP_085238182.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  B5P37_RS10610 (B5P37_10610) recA 2281928..2282971 (+) 1044 WP_085238183.1 recombinase RecA Machinery gene
  B5P37_RS10615 (B5P37_10615) rny 2283452..2285011 (+) 1560 WP_085238184.1 ribonuclease Y -
  B5P37_RS10620 (B5P37_10620) - 2285102..2285320 (-) 219 WP_085238185.1 hypothetical protein -
  B5P37_RS10625 (B5P37_10625) - 2285600..2285992 (+) 393 WP_085238186.1 metalloregulator ArsR/SmtB family transcription factor -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37954.00 Da        Isoelectric Point: 5.0169

>NTDB_id=225839 B5P37_RS10610 WP_085238183.1 2281928..2282971(+) (recA) [Staphylococcus lutrae strain ATCC 700373]
MDNERQKALDTVIKNMEKSFGKGAVMKLGENKDRRVSSISTGSVTLDHALGVGGYPKGRIIEVYGPESSGKTTVALHAIA
EVQKNGGVAAFIDAEHALDPVYAEALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVIIDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSAAISKSKTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR
TKIKVVKNKVAPPFKVAEVDIMYGKGISREGELIDLGVQYDIVDKSGAWYSYNGERMGQGKENVKQFLQENPKLEDEIDR
KLREKLGIFDGDVEEAEQEETQTLFDE

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=225839 B5P37_RS10610 WP_085238183.1 2281928..2282971(+) (recA) [Staphylococcus lutrae strain ATCC 700373]
TTGGATAATGAACGTCAAAAAGCATTAGATACAGTCATTAAAAATATGGAAAAATCATTTGGTAAAGGTGCTGTAATGAA
ACTCGGTGAAAATAAAGATCGTCGTGTTTCAAGTATTTCGACGGGTTCTGTAACATTAGACCATGCATTAGGCGTGGGTG
GCTATCCTAAAGGTCGTATTATCGAAGTTTATGGCCCAGAGAGTTCAGGTAAAACGACAGTAGCCCTACATGCGATTGCA
GAAGTACAGAAAAATGGAGGTGTTGCTGCTTTTATTGATGCTGAGCACGCACTTGATCCAGTTTATGCTGAAGCACTTGG
CGTAGACATAGATAATTTATATTTATCACAACCTGATCATGGAGAGCAAGGTCTTGAAATCGCTGAAGCATTTGTAAGAA
GTGGTGCTGTTGATATCGTGATTATTGACTCTGTTGCTGCATTAACACCTAAAGCTGAGATTGAAGGTGAGATGGGGGAT
ACGCATGTAGGTTTGCAAGCGCGTTTGATGTCTCAAGCGTTGCGTAAATTGTCTGCTGCGATTTCTAAGTCGAAAACAAC
CGCTATATTTATTAACCAAATTCGTGAAAAAGTTGGCGTAATGTTTGGTAATCCTGAGACAACACCAGGTGGACGCGCAC
TCAAGTTTTATAGCTCCGTTCGTTTGGAAGTCCGCCGTGCAGAACAATTAAAACAAGGTCAAGATATCGTAGGTAACCGA
ACGAAAATCAAAGTCGTGAAAAACAAAGTGGCACCACCGTTTAAAGTGGCTGAAGTTGACATTATGTATGGTAAAGGTAT
TTCTCGTGAAGGTGAATTGATAGATTTAGGGGTACAATATGATATTGTGGATAAGTCGGGTGCGTGGTACTCATACAACG
GTGAACGTATGGGACAAGGTAAAGAAAATGTTAAACAATTTTTACAAGAAAACCCTAAACTTGAAGATGAAATCGATCGT
AAATTACGAGAAAAACTAGGCATTTTTGATGGTGATGTTGAAGAGGCTGAACAAGAAGAAACACAGACTTTATTTGATGA
ATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

76.38

93.948

0.718
  recA Latilactobacillus sakei subsp. sakei 23K

68.966

100

0.692
  recA Streptococcus pyogenes NZ131

69.605

94.813

0.66
  recA Streptococcus mutans UA159

65.616

100

0.66
  recA Streptococcus pneumoniae Rx1

65.23

100

0.654
  recA Streptococcus pneumoniae D39

65.23

100

0.654
  recA Streptococcus pneumoniae R6

65.23

100

0.654
  recA Streptococcus pneumoniae TIGR4

65.23

100

0.654
  recA Streptococcus mitis NCTC 12261

65.015

98.847

0.643
  recA Streptococcus mitis SK321

64.826

99.135

0.643
  recA Lactococcus lactis subsp. cremoris KW2

65.559

95.389

0.625
  recA Acinetobacter baumannii D1279779

62.069

100

0.622
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.343

98.271

0.622
  recA Neisseria gonorrhoeae MS11

62.865

98.559

0.62
  recA Neisseria gonorrhoeae strain FA1090

62.865

98.559

0.62
  recA Neisseria gonorrhoeae MS11

62.865

98.559

0.62
  recA Helicobacter pylori 26695

63.72

94.524

0.602
  recA Acinetobacter baylyi ADP1

64.11

93.948

0.602
  recA Helicobacter pylori strain NCTC11637

63.415

94.524

0.599
  recA Ralstonia pseudosolanacearum GMI1000

63.804

93.948

0.599
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.19

93.948

0.594
  recA Vibrio cholerae strain A1552

63.19

93.948

0.594
  recA Pseudomonas stutzeri DSM 10701

61.656

93.948

0.579
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.423

95.389

0.576
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.382

91.931

0.573
  recA Glaesserella parasuis strain SC1401

60.372

93.084

0.562

Multiple sequence alignment