Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   B5808_RS06810 Genome accession   NZ_CP020715
Coordinates   1445486..1446550 (+) Length   354 a.a.
NCBI ID   WP_085019094.1    Uniprot ID   A0A1X9LIE7
Organism   Cnuibacter physcomitrellae strain XA(T)     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1440486..1451550
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B5808_RS06785 (B5808_06785) - 1440541..1443363 (+) 2823 WP_085019089.1 FtsK/SpoIIIE family DNA translocase -
  B5808_RS06790 (B5808_06790) pgsA 1443367..1443972 (+) 606 WP_085019090.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  B5808_RS06795 (B5808_06795) - 1443969..1444451 (+) 483 WP_085019091.1 CinA family protein -
  B5808_RS06800 (B5808_06800) - 1444606..1444914 (+) 309 WP_085019092.1 helix-turn-helix domain-containing protein -
  B5808_RS06805 (B5808_06805) - 1444955..1445179 (+) 225 WP_085019093.1 DUF3046 domain-containing protein -
  B5808_RS06810 (B5808_06810) recA 1445486..1446550 (+) 1065 WP_085019094.1 recombinase RecA Machinery gene
  B5808_RS06815 (B5808_06815) - 1446559..1447146 (+) 588 WP_085019095.1 regulatory protein RecX -
  B5808_RS06820 (B5808_06820) miaB 1447176..1448789 (+) 1614 WP_085019096.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  B5808_RS06825 (B5808_06825) miaA 1448786..1449730 (+) 945 WP_373284498.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  B5808_RS06830 (B5808_06830) dapF 1449736..1450617 (+) 882 WP_085019098.1 diaminopimelate epimerase -
  B5808_RS06835 (B5808_06835) - 1450631..1451251 (-) 621 WP_085019099.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 37795.17 Da        Isoelectric Point: 5.5428

>NTDB_id=225524 B5808_RS06810 WP_085019094.1 1445486..1446550(+) (recA) [Cnuibacter physcomitrellae strain XA(T)]
MPTEANREKALETALAQIDRQFGKGSVMRLGSDERAPVEVVPTGSIALDVALGIGGIPRGRIVEIYGPESSGKTTLTLHA
IANAQRAGGIAAFIDAEHALDPDYAQKLGVDIDSLLVSQPDTGEQALEIADMLVRSGSIDLIVIDSVAALVPRAEIEGEM
GDAHVGLQARLMSQALRKLTGALNQTNTTMIFINQLREKVGVFFGSPETTAGGKALKFYASVRLDIRRIETLKEGTEAVG
NRTRVKVVKNKMAPPFKQAEFDILYGVGISREGSLIDFGVEHEIVRKSGAWYTYDGDQLGQGKENARRFLSENTDIAAEI
ETKILAKLGIGGAKAEAPAPVESLQAKMASKKGA

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=225524 B5808_RS06810 WP_085019094.1 1445486..1446550(+) (recA) [Cnuibacter physcomitrellae strain XA(T)]
ATGCCCACCGAAGCCAACCGCGAGAAGGCCCTCGAGACCGCCCTCGCCCAGATCGACCGTCAGTTCGGCAAGGGCTCGGT
GATGCGCCTCGGCAGCGACGAGCGTGCGCCCGTCGAGGTCGTGCCCACGGGGTCCATCGCCCTCGACGTCGCCCTCGGCA
TCGGCGGCATCCCCCGCGGCCGCATCGTCGAGATCTACGGCCCGGAGTCGTCGGGTAAGACCACGCTGACGCTCCACGCC
ATCGCGAACGCCCAGCGCGCGGGAGGCATCGCCGCGTTCATCGATGCCGAGCACGCGCTCGACCCCGACTACGCCCAGAA
GCTCGGAGTCGACATCGACTCCCTTCTGGTCTCGCAGCCCGACACCGGTGAGCAGGCCCTCGAGATCGCCGACATGCTCG
TCCGCTCCGGCTCGATCGACCTCATCGTGATCGACTCCGTGGCCGCTCTCGTGCCCCGCGCCGAGATCGAGGGCGAGATG
GGCGACGCCCACGTGGGCCTCCAGGCCCGGCTGATGTCGCAGGCCCTCCGCAAGCTCACGGGTGCGCTCAACCAGACCAA
CACCACGATGATCTTCATCAACCAGCTCCGCGAGAAGGTCGGCGTGTTCTTCGGCAGCCCCGAGACCACCGCGGGCGGCA
AGGCGCTGAAGTTCTACGCGTCGGTCCGGCTCGACATCCGTCGCATCGAGACCCTCAAGGAGGGCACCGAGGCCGTCGGC
AACCGCACCCGCGTGAAGGTCGTCAAGAACAAGATGGCGCCGCCCTTCAAGCAGGCCGAGTTCGACATCCTGTACGGCGT
CGGCATCTCCCGCGAGGGCAGCCTGATCGACTTCGGCGTCGAGCACGAGATCGTCCGCAAGTCCGGTGCCTGGTACACCT
ACGACGGCGACCAGCTGGGTCAGGGCAAGGAGAACGCCCGCCGGTTCCTCTCCGAGAACACCGACATCGCCGCCGAGATC
GAGACGAAGATCCTCGCCAAGCTCGGCATCGGCGGGGCGAAGGCTGAGGCCCCGGCCCCCGTCGAGTCGCTCCAGGCGAA
GATGGCCTCGAAGAAGGGCGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X9LIE7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

67.257

95.763

0.644
  recA Acinetobacter baylyi ADP1

69.04

91.243

0.63
  recA Acinetobacter baumannii D1279779

68.615

91.808

0.63
  recA Ralstonia pseudosolanacearum GMI1000

70.607

88.418

0.624
  recA Bacillus subtilis subsp. subtilis str. 168

66.564

92.09

0.613
  recA Vibrio cholerae strain A1552

67.712

90.113

0.61
  recA Vibrio cholerae O1 biovar El Tor strain E7946

67.712

90.113

0.61
  recA Neisseria gonorrhoeae MS11

66.258

92.09

0.61
  recA Neisseria gonorrhoeae MS11

66.258

92.09

0.61
  recA Neisseria gonorrhoeae strain FA1090

66.258

92.09

0.61
  recA Helicobacter pylori 26695

60.694

97.74

0.593
  recA Helicobacter pylori strain NCTC11637

60.694

97.74

0.593
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.024

92.655

0.593
  recA Latilactobacillus sakei subsp. sakei 23K

64.506

91.525

0.59
  recA Lactococcus lactis subsp. cremoris KW2

62.121

93.22

0.579
  recA Glaesserella parasuis strain SC1401

63.836

89.831

0.573
  recA Streptococcus pneumoniae R6

60.909

93.22

0.568
  recA Streptococcus pneumoniae Rx1

60.909

93.22

0.568
  recA Streptococcus pneumoniae D39

60.909

93.22

0.568
  recA Streptococcus pneumoniae TIGR4

60.909

93.22

0.568
  recA Streptococcus mitis NCTC 12261

60.606

93.22

0.565
  recA Streptococcus mitis SK321

60.606

93.22

0.565
  recA Streptococcus mutans UA159

60.671

92.655

0.562
  recA Streptococcus pyogenes NZ131

60.856

92.373

0.562
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.878

92.938

0.556
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.434

93.785

0.548

Multiple sequence alignment