Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   B5D77_RS16895 Genome accession   NZ_CP020664
Coordinates   3308890..3309957 (-) Length   355 a.a.
NCBI ID   WP_106909248.1    Uniprot ID   -
Organism   Microcystis sp. MC19     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3303890..3314957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B5D77_RS16865 (B5D77_16635) - 3304481..3305269 (+) 789 WP_106909246.1 ABC transporter permease -
  B5D77_RS16870 (B5D77_16640) - 3305427..3306011 (+) 585 WP_008203860.1 pseudouridine synthase -
  B5D77_RS27340 (B5D77_16650) - 3306363..3306629 (-) 267 WP_106909247.1 transposase family protein -
  B5D77_RS16885 (B5D77_16655) - 3307357..3308226 (+) 870 WP_008203044.1 bile acid:sodium symporter family protein -
  B5D77_RS16890 (B5D77_16660) - 3308270..3308866 (+) 597 WP_039900179.1 hypothetical protein -
  B5D77_RS16895 (B5D77_16665) recA 3308890..3309957 (-) 1068 WP_106909248.1 recombinase RecA Machinery gene
  B5D77_RS16900 (B5D77_16670) - 3310084..3311037 (-) 954 WP_106909249.1 aldo/keto reductase -
  B5D77_RS16905 (B5D77_16675) - 3311706..3312041 (-) 336 WP_106909250.1 XisI protein -
  B5D77_RS16910 (B5D77_16680) - 3312029..3312445 (-) 417 WP_002751648.1 XisH family protein -
  B5D77_RS16915 (B5D77_16685) - 3312824..3313549 (+) 726 WP_016514541.1 2-phosphosulfolactate phosphatase family protein -
  B5D77_RS16920 (B5D77_16690) - 3313633..3314880 (+) 1248 WP_106909251.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 38197.65 Da        Isoelectric Point: 4.7498

>NTDB_id=225346 B5D77_RS16895 WP_106909248.1 3308890..3309957(-) (recA) [Microcystis sp. MC19]
MATMTNNSDRDKALGLVLNQIERNFGKGSIMRLGDATRMRVETVPSGALTLDMALGGGLPKGRIVEIYGPESSGKTTLAL
HAIAEVQKAGGVAAFVDAEHALDPTYSDVLGVDINNLLVAQPDTGEAALEIVDQLVRSSAVDIVVIDSVAALVPRAEIEG
EMGDNQVGLQARLMSKALRKIAGNIGKSGCVVIFLNQLRQKIGVTYGNPEVTTGGTALKFYASVRLDIRRIQTLKKGTEG
EYGIRAKVKVAKNKVAPPFRIAEFDIIFGKGISQVGCMLDIAEQTNVVTRKGAWYSYNGENIAQGRDNAVKYLEEKPEVA
AEIEKLLRDKLDMGSVPFPTEPADEDEEDDLEPEI

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=225346 B5D77_RS16895 WP_106909248.1 3308890..3309957(-) (recA) [Microcystis sp. MC19]
ATGGCGACAATGACAAATAACTCCGATCGAGATAAAGCCTTAGGCTTAGTCTTAAATCAAATCGAGCGCAACTTTGGCAA
AGGTTCGATCATGCGTTTAGGAGATGCCACCCGGATGCGGGTGGAAACCGTGCCTAGCGGTGCTTTAACCCTAGATATGG
CTTTGGGTGGCGGTTTACCGAAAGGCCGCATCGTCGAAATTTACGGGCCGGAAAGTTCTGGAAAAACCACCTTAGCCCTC
CATGCGATCGCAGAAGTGCAGAAAGCCGGGGGAGTGGCGGCCTTTGTCGATGCGGAACACGCGTTAGATCCCACCTATTC
GGATGTTTTAGGGGTAGATATCAATAATTTACTGGTGGCACAACCGGACACGGGGGAGGCAGCCTTAGAAATAGTTGACC
AGTTAGTGCGTTCTTCGGCCGTGGATATCGTTGTCATCGACTCGGTGGCCGCTTTAGTGCCGCGGGCGGAAATTGAGGGG
GAAATGGGGGATAATCAGGTGGGTTTGCAGGCCCGTTTGATGAGTAAAGCCCTGCGAAAAATTGCTGGTAATATTGGTAA
ATCCGGTTGTGTGGTGATTTTCCTCAACCAACTGCGGCAAAAAATCGGTGTCACCTACGGCAATCCTGAAGTGACCACCG
GAGGAACGGCCTTAAAATTCTATGCCTCGGTGCGTTTAGATATCCGTCGCATTCAAACTTTGAAAAAAGGCACGGAAGGG
GAATACGGAATTCGGGCTAAAGTTAAGGTGGCTAAAAATAAAGTCGCGCCTCCTTTCCGGATTGCTGAATTTGATATTAT
CTTCGGTAAAGGCATTTCCCAGGTGGGTTGTATGCTCGATATCGCCGAACAAACTAACGTAGTTACTCGTAAAGGGGCAT
GGTATAGCTATAATGGCGAAAATATTGCCCAGGGTCGCGATAATGCCGTTAAATATCTTGAAGAAAAGCCAGAAGTAGCG
GCGGAAATTGAGAAGTTATTGCGGGATAAATTAGATATGGGTTCGGTTCCTTTCCCCACGGAACCGGCCGATGAGGACGA
GGAGGACGATCTGGAACCAGAAATCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(12-273)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

61.714

98.592

0.608
  recA Acinetobacter baumannii D1279779

60.405

97.465

0.589
  recA Ralstonia pseudosolanacearum GMI1000

62.763

93.803

0.589
  recA Pseudomonas stutzeri DSM 10701

60.465

96.901

0.586
  recA Helicobacter pylori 26695

57.429

98.592

0.566
  recA Helicobacter pylori strain NCTC11637

57.429

98.592

0.566
  recA Latilactobacillus sakei subsp. sakei 23K

57.925

97.746

0.566
  recA Neisseria gonorrhoeae MS11

57.143

98.592

0.563
  recA Neisseria gonorrhoeae MS11

57.143

98.592

0.563
  recA Neisseria gonorrhoeae strain FA1090

57.143

98.592

0.563
  recA Glaesserella parasuis strain SC1401

57.061

97.746

0.558
  recA Bacillus subtilis subsp. subtilis str. 168

61.3

90.986

0.558
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

57.91

94.366

0.546
  recA Streptococcus pneumoniae R6

58.308

93.239

0.544
  recA Streptococcus pneumoniae Rx1

58.308

93.239

0.544
  recA Streptococcus pneumoniae D39

58.308

93.239

0.544
  recA Streptococcus pneumoniae TIGR4

58.308

93.239

0.544
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.202

91.831

0.544
  recA Vibrio cholerae strain A1552

59.202

91.831

0.544
  recA Streptococcus mitis SK321

58.589

91.831

0.538
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

55.523

96.901

0.538
  recA Lactococcus lactis subsp. cremoris KW2

57.576

92.958

0.535
  recA Streptococcus mitis NCTC 12261

57.975

91.831

0.532
  recA Streptococcus pyogenes NZ131

57.012

92.394

0.527
  recA Streptococcus mutans UA159

56.481

91.268

0.515
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55

90.141

0.496

Multiple sequence alignment