Detailed information NTG0022406

Bioinformatically predicted

Overview

• Name: recA
• Type: Machinery gene
• Locus tag: SO_RS16030
• Genome accession: NC_004347
• Coordinates: 3573159..3574232 (-)
• Length: 357 a.a.
• NCBI ID: WP_011073286.1
• Uniprot ID: -
• Organism: Shewanella oneidensis MR-1
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 3568159..3579232

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SO_RS16010 (SO_3426)	csrA	3568177..3568374 (-)	198	WP_006082602.1	carbon storage regulator CsrA	-
SO_RS16015 (SO_3427)	-	3568493..3569749 (-)	1257	WP_011073283.1	aspartate kinase	-
SO_RS16020 (SO_3428)	alaS	3569759..3572383 (-)	2625	WP_011073284.1	alanine--tRNA ligase	-
SO_RS16025 (SO_3429)	-	3572662..3573141 (-)	480	WP_405130462.1	regulatory protein RecX	-
SO_RS16030 (SO_3430)	recA	3573159..3574232 (-)	1074	WP_011073286.1	recombinase RecA	Machinery gene
SO_RS16035 (SO_3431)	mutS	3574613..3577183 (+)	2571	WP_011073287.1	DNA mismatch repair protein MutS	-
SO_RS16040 (SO_3432)	rpoS	3577266..3578246 (-)	981	WP_011073288.1	RNA polymerase sigma factor RpoS	-
SO_RS16045 (SO_3433)	-	3578328..3579224 (-)	897	WP_011073289.1	peptidoglycan DD-metalloendopeptidase family protein	-

Sequence

Protein

• Length: 357 a.a.
• Molecular weight: 38072.50 Da
• Isoelectric Point: 4.8722

>NTDB_id=22406 SO_RS16030 WP_011073286.1 3573159..3574232(-) (recA) [Shewanella oneidensis MR-1]
MKVDPNKEKALAAVLSQIEKQFGKGSIMKLGEDRSMDVETISTGSLSLDVALGAGGLPMGRIVEIYGPESSGKTTLTLEV
IAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVG
NETRVKVVKNKVAAPFKQAEFQILYGQGINRTGELVDLGVAHKLIEKAGAWYSYKGDKIGQGRANAGKYLTENPAIAAEI
DKTLRELLLSNPSALASSASDDDNVEGNIDLETGEVF

Nucleotide

• Length: 1074 bp

>NTDB_id=22406 SO_RS16030 WP_011073286.1 3573159..3574232(-) (recA) [Shewanella oneidensis MR-1]
ATGAAGGTCGATCCAAACAAAGAGAAAGCACTTGCTGCGGTATTGAGCCAAATTGAGAAGCAATTTGGTAAAGGCTCCAT
CATGAAGCTGGGCGAAGACCGCTCTATGGATGTTGAGACCATTTCTACAGGTTCTCTTTCCCTTGACGTCGCTCTTGGGG
CAGGTGGTTTGCCTATGGGCCGTATCGTTGAGATCTATGGTCCAGAGTCATCAGGTAAAACAACTCTGACATTAGAAGTG
ATTGCCGCCGCTCAGCGCGAAGGTAAAACCTGTGCCTTTATCGATGCAGAACACGCTCTTGATCCTATCTACGCGAAAAA
ATTAGGCGTTGATATTGATAACTTATTGTGTTCACAGCCCGATACCGGTGAGCAAGCCCTTGAGATTTGTGATGCATTAA
CCCGTTCTGGTGCGGTTGATGTGATTATCGTTGACTCGGTAGCGGCATTAACACCAAAGGCGGAGATTGAAGGTGAAATT
GGTGACTCACACATGGGCTTAGCGGCTCGTATGATGAGCCAAGCAATGCGTAAGTTAGCGGGTAACCTCAAGCAATCGAA
CACTCTGTTAATCTTCATCAACCAAATTCGTATGAAGATTGGGGTGATGTTTGGTAACCCAGAAACCACAACGGGTGGTA
ATGCTCTGAAATTCTATGCCTCTGTTCGTTTGGATATCCGCCGTACAGGCGCTATCAAAGAAGGTGATGAGGTGGTTGGT
AACGAGACACGCGTAAAAGTCGTTAAAAACAAAGTTGCAGCGCCATTTAAACAAGCAGAGTTCCAAATTCTATACGGTCA
AGGTATCAACCGTACTGGCGAGTTAGTTGATTTAGGTGTAGCCCATAAACTGATTGAGAAAGCAGGCGCTTGGTATAGCT
ACAAGGGCGATAAAATTGGTCAAGGCCGTGCAAATGCGGGTAAATATTTGACTGAAAACCCAGCTATAGCCGCTGAAATC
GATAAGACATTGCGTGAGCTATTGTTGAGTAACCCGAGTGCCCTGGCATCATCGGCATCCGATGATGACAATGTCGAGGG
GAATATTGATTTAGAAACAGGCGAAGTGTTCTGA

Domains

Predicted by InterproScan.

• recA bacterial DNA recombination protein (RecA) (9-270)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recA	Vibrio cholerae strain A1552	82.081	96.919	0.796
recA	Vibrio cholerae O1 biovar El Tor strain E7946	82.081	96.919	0.796
recA	Pseudomonas stutzeri DSM 10701	73.021	95.518	0.697
recA	Glaesserella parasuis strain SC1401	68.571	98.039	0.672
recA	Acinetobacter baumannii D1279779	70.088	95.518	0.669
recA	Acinetobacter baylyi ADP1	71.903	92.717	0.667
recA	Neisseria gonorrhoeae MS11	69.35	90.476	0.627
recA	Neisseria gonorrhoeae MS11	69.35	90.476	0.627
recA	Neisseria gonorrhoeae strain FA1090	69.35	90.476	0.627
recA	Ralstonia pseudosolanacearum GMI1000	70.794	88.235	0.625
recA	Streptococcus mitis SK321	58.953	100	0.599
recA	Streptococcus mitis NCTC 12261	58.953	100	0.599
recA	Streptococcus pneumoniae TIGR4	63.415	91.877	0.583
recA	Streptococcus pneumoniae Rx1	63.415	91.877	0.583
recA	Streptococcus pneumoniae D39	63.415	91.877	0.583
recA	Streptococcus pneumoniae R6	63.415	91.877	0.583
recA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	59.42	96.639	0.574
recA	Riemerella anatipestifer ATCC 11845 = DSM 15868	60.961	93.277	0.569
recA	Streptococcus pyogenes NZ131	61.585	91.877	0.566
recA	Streptococcus mutans UA159	61.28	91.877	0.563
recA	Helicobacter pylori strain NCTC11637	60.241	92.997	0.56
recA	Bacillus subtilis subsp. subtilis str. 168	62.305	89.916	0.56
recA	Helicobacter pylori 26695	59.94	92.997	0.557
recA	Lactococcus lactis subsp. cremoris KW2	60.061	91.877	0.552
recA	Latilactobacillus sakei subsp. sakei 23K	61.442	89.356	0.549
recA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	61.27	88.235	0.541