Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   B5S50_RS18105 Genome accession   NZ_CP020473
Coordinates   3851289..3852335 (+) Length   348 a.a.
NCBI ID   WP_254306768.1    Uniprot ID   -
Organism   Clostridium sp. 001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3846289..3857335
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B5S50_RS18090 (B5S50_17895) - 3846871..3849129 (+) 2259 WP_065077420.1 DNA translocase FtsK -
  B5S50_RS18095 (B5S50_17900) rimO 3849189..3850511 (+) 1323 WP_217302463.1 30S ribosomal protein S12 methylthiotransferase RimO -
  B5S50_RS18100 (B5S50_17905) pgsA 3850513..3851100 (+) 588 WP_013237992.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  B5S50_RS18105 (B5S50_17910) recA 3851289..3852335 (+) 1047 WP_254306768.1 recombinase RecA Machinery gene
  B5S50_RS18110 (B5S50_17915) rny 3852571..3854115 (+) 1545 WP_217302465.1 ribonuclease Y -
  B5S50_RS18115 (B5S50_17920) - 3854266..3854526 (+) 261 WP_023163135.1 stage V sporulation protein S -
  B5S50_RS18120 (B5S50_17925) - 3854684..3855544 (+) 861 WP_254306619.1 decaprenyl-phosphate phosphoribosyltransferase -
  B5S50_RS18125 (B5S50_17930) - 3855563..3856864 (+) 1302 WP_217302467.1 hypothetical protein -
  B5S50_RS18130 (B5S50_17935) - 3856861..3857217 (+) 357 WP_217302468.1 SMR family transporter -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37961.38 Da        Isoelectric Point: 8.8728

>NTDB_id=223594 B5S50_RS18105 WP_254306768.1 3851289..3852335(+) (recA) [Clostridium sp. 001]
MGQIEKQFGKGAIMKLGEHSVLNVDAISTGCLDLDIALGIGGVPRGRVIEIFGPESSGKTTVALHIIAEAQKNGGAAAFI
DAEHALDPSYAQNLGVDINNLIVSQPDTGEQAMEITEALVRSNAIDVLVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQ
ALRKLTSSINKSKCVTVFINQLREKVGVMFGNPEVTPGGRALKFYSSVRMDVRRIDSIKQGDTIVGNRTRVKVIKNKVAP
PFKQAEFDIMYNQGISREGNVLDVGVREELVQKSGAWFSYKETRLGQGRENAKQFLKENNDILVEIESKIREKYKLPSLK
KNSLEDKDKSNAGSKTDSKKDNLKHSDK

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=223594 B5S50_RS18105 WP_254306768.1 3851289..3852335(+) (recA) [Clostridium sp. 001]
ATGGGACAGATAGAAAAACAATTTGGAAAAGGTGCCATAATGAAACTAGGAGAACACAGTGTATTAAATGTGGATGCCAT
TTCAACAGGCTGCCTTGACTTAGATATAGCATTAGGTATAGGTGGTGTTCCAAGAGGAAGGGTAATAGAAATATTTGGCC
CTGAATCTTCAGGTAAGACTACGGTGGCACTTCATATAATTGCAGAAGCTCAGAAAAATGGAGGTGCTGCAGCTTTTATA
GATGCAGAGCATGCACTAGATCCTTCTTATGCCCAAAATTTAGGAGTAGATATAAATAATCTTATTGTATCCCAACCAGA
TACTGGAGAACAGGCTATGGAGATAACAGAAGCACTTGTAAGATCCAATGCTATAGATGTTTTGGTAGTGGATTCAGTAG
CAGCACTTGTGCCAAAGGCTGAAATAGAGGGAGAAATGGGAGACTCACATGTGGGACTTCAAGCTAGGCTTATGTCCCAA
GCTCTTAGAAAACTTACATCTTCTATAAATAAATCAAAGTGTGTAACAGTATTTATAAATCAATTAAGAGAAAAAGTAGG
AGTTATGTTCGGCAATCCTGAGGTTACGCCTGGTGGAAGAGCTTTAAAGTTTTATTCTTCAGTTAGAATGGATGTAAGAA
GAATAGATTCTATAAAGCAAGGAGATACCATAGTAGGTAATAGAACAAGAGTAAAGGTTATTAAAAATAAAGTAGCTCCA
CCTTTTAAACAGGCAGAGTTTGACATAATGTACAATCAAGGTATTTCAAGAGAAGGAAATGTGTTGGATGTAGGTGTTAG
AGAAGAATTGGTACAGAAAAGTGGTGCATGGTTTTCCTATAAAGAAACACGGCTTGGACAAGGCAGGGAAAATGCAAAAC
AATTTTTGAAAGAAAATAATGATATATTAGTTGAGATAGAAAGCAAGATAAGGGAAAAATATAAATTACCTTCTTTAAAA
AAGAATTCTCTTGAAGACAAAGATAAAAGTAATGCTGGTAGTAAAACTGATTCAAAAAAAGATAATTTAAAACATTCTGA
TAAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(2-256)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

71.656

90.23

0.647
  recA Latilactobacillus sakei subsp. sakei 23K

63.975

92.529

0.592
  recA Streptococcus pneumoniae R6

59.195

100

0.592
  recA Streptococcus pneumoniae D39

59.195

100

0.592
  recA Streptococcus pneumoniae Rx1

59.195

100

0.592
  recA Streptococcus pneumoniae TIGR4

59.195

100

0.592
  recA Acinetobacter baylyi ADP1

59.593

98.851

0.589
  recA Neisseria gonorrhoeae MS11

66.129

89.08

0.589
  recA Neisseria gonorrhoeae MS11

66.129

89.08

0.589
  recA Neisseria gonorrhoeae strain FA1090

66.129

89.08

0.589
  recA Pseudomonas stutzeri DSM 10701

64.465

91.379

0.589
  recA Streptococcus mutans UA159

59.649

98.276

0.586
  recA Ralstonia pseudosolanacearum GMI1000

62.654

93.103

0.583
  recA Helicobacter pylori 26695

64.63

89.368

0.578
  recA Helicobacter pylori strain NCTC11637

64.63

89.368

0.578
  recA Acinetobacter baumannii D1279779

63.898

89.943

0.575
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.538

93.391

0.575
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.091

91.092

0.575
  recA Vibrio cholerae strain A1552

63.091

91.092

0.575
  recA Streptococcus mitis NCTC 12261

62.776

91.092

0.572
  recA Streptococcus mitis SK321

62.461

91.092

0.569
  recA Streptococcus pyogenes NZ131

62.54

90.517

0.566
  recA Glaesserella parasuis strain SC1401

63.344

89.368

0.566
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.755

91.667

0.566
  recA Lactococcus lactis subsp. cremoris KW2

60.312

91.954

0.555
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.962

90.23

0.523

Multiple sequence alignment