Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   NMB_RS01160 Genome accession   NC_003112
Coordinates   223300..224151 (+) Length   283 a.a.
NCBI ID   WP_002224812.1    Uniprot ID   Q9K1E0
Organism   Neisseria meningitidis MC58     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 218300..229151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMB_RS01145 (NMB0215) - 220476..221042 (-) 567 WP_002221883.1 manganese efflux pump MntP family protein -
  NMB_RS01150 - 221162..221362 (-) 201 WP_141562914.1 hypothetical protein -
  NMB_RS01155 (NMB0216) katA 221438..222952 (-) 1515 WP_002218620.1 catalase KatA -
  NMB_RS01160 (NMB0217) rpoN/rpoN1 223300..224151 (+) 852 WP_002224812.1 RNA polymerase factor sigma-54 Machinery gene
  NMB_RS01165 (NMB0218) - 225071..226201 (-) 1131 WP_002221887.1 glycosyltransferase family 4 protein -
  NMB_RS01170 (NMB0219) fabF 226506..227753 (-) 1248 WP_002224813.1 beta-ketoacyl-ACP synthase II -
  NMB_RS01175 (NMB0220) acpP 227909..228145 (-) 237 WP_002215574.1 acyl carrier protein -

Sequence

Protein


Download         Length: 283 a.a.        Molecular weight: 31476.46 Da        Isoelectric Point: 4.5180

>NTDB_id=22332 NMB_RS01160 WP_002224812.1 223300..224151(+) (rpoN/rpoN1) [Neisseria meningitidis MC58]
MTLLGIKLKQTQQLNQRLQQSLRVLQMSGIELEREVENWLSDNPLLERKDTDEFSDAEFSHYTAPARQIGGDEGEDMLSN
IAGEQDFKQYLHAQVCEHPLSDQEAACVHILIDFLDEQGYLTDSIEDILDHTPLEWMLDEAMLQHALTALKKFDPAGVAA
ADLNESLILQIERLGECAAKPAALHIVRNALDSIDGNRSQTLARIKKHLPQTDSGTLEAALDLIASLNPFPAAGFASSTP
TPYSDEALANLLAFRGMEVSRRTIAKYRESFEIPAAHKRKTAE

Nucleotide


Download         Length: 852 bp        

>NTDB_id=22332 NMB_RS01160 WP_002224812.1 223300..224151(+) (rpoN/rpoN1) [Neisseria meningitidis MC58]
ATGACCTTACTCGGAATAAAGCTCAAACAGACCCAGCAGCTCAACCAGCGGCTGCAACAATCTTTGCGCGTATTGCAGAT
GTCGGGTATCGAACTTGAACGCGAGGTCGAAAACTGGCTGTCGGACAACCCCCTGCTCGAACGCAAAGACACGGATGAAT
TTTCCGATGCCGAGTTCAGCCATTACACTGCGCCTGCCCGTCAAATCGGCGGAGACGAAGGCGAAGATATGCTGTCCAAC
ATCGCCGGCGAGCAGGATTTCAAGCAATACCTGCACGCGCAAGTATGCGAACACCCGCTTTCCGACCAAGAAGCCGCCTG
TGTCCACATCCTTATCGATTTCCTTGACGAGCAGGGTTATCTGACCGACAGCATCGAAGACATCCTCGACCATACGCCCT
TAGAGTGGATGTTGGATGAAGCAATGCTGCAACACGCGCTGACCGCATTGAAAAAATTCGACCCGGCAGGCGTGGCCGCC
GCCGATTTGAACGAATCGCTGATACTGCAGATAGAAAGATTGGGCGAATGTGCTGCCAAACCCGCCGCCCTGCATATCGT
CCGAAACGCCCTCGACAGCATTGACGGCAACCGCAGCCAAACCCTCGCACGAATAAAAAAACACCTGCCCCAAACCGACA
GCGGCACACTCGAAGCCGCACTCGACCTCATTGCTTCGCTCAATCCCTTTCCCGCCGCCGGTTTTGCCTCGTCCACGCCC
ACGCCGTATTCTGACGAGGCGCTCGCCAACCTGCTGGCTTTCCGCGGCATGGAGGTTTCTCGCCGCACCATTGCCAAATA
CAGAGAATCCTTTGAGATTCCGGCAGCACACAAACGCAAAACCGCAGAATAA

Domains

Predicted by InterProScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-47)

Sigma-54, DNA binding domain (Sigma54_DBD)

(241-280)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(79-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9K1E0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

35.052

100

0.36

Multiple sequence alignment