Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | A6J95_RS03630 | Genome accession | NZ_CP020424 |
| Coordinates | 756606..757652 (-) | Length | 348 a.a. |
| NCBI ID | WP_003428218.1 | Uniprot ID | A0A031WFI0 |
| Organism | Clostridioides difficile strain FDAARGOS_267 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 711660..770784 | 756606..757652 | within | 0 |
Gene organization within MGE regions
Location: 711660..770784
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A6J95_RS03385 (A6J95_03345) | - | 711932..712330 (+) | 399 | WP_009889162.1 | helix-turn-helix domain-containing protein | - |
| A6J95_RS03390 (A6J95_03350) | - | 712547..712756 (-) | 210 | WP_009889160.1 | hypothetical protein | - |
| A6J95_RS03395 (A6J95_03355) | - | 712788..712997 (-) | 210 | WP_003428146.1 | helix-turn-helix transcriptional regulator | - |
| A6J95_RS03400 (A6J95_03360) | - | 713296..713715 (+) | 420 | WP_003438466.1 | helix-turn-helix domain-containing protein | - |
| A6J95_RS03405 (A6J95_03365) | - | 713943..714398 (+) | 456 | WP_003419674.1 | hypothetical protein | - |
| A6J95_RS03410 (A6J95_03370) | - | 714554..715366 (-) | 813 | WP_009896280.1 | phage tail protein | - |
| A6J95_RS03415 (A6J95_03375) | - | 715368..715985 (-) | 618 | WP_009896278.1 | putative phage tail protein | - |
| A6J95_RS03420 (A6J95_03380) | - | 715985..717034 (-) | 1050 | WP_009896275.1 | baseplate J/gp47 family protein | - |
| A6J95_RS03425 (A6J95_03385) | - | 717027..717458 (-) | 432 | WP_009896273.1 | DUF2634 domain-containing protein | - |
| A6J95_RS03430 (A6J95_03390) | - | 717458..717784 (-) | 327 | WP_009896271.1 | DUF2577 family protein | - |
| A6J95_RS03435 (A6J95_03395) | - | 717798..719315 (-) | 1518 | WP_018112761.1 | NlpC/P60 family protein | - |
| A6J95_RS03440 (A6J95_03400) | - | 719584..720006 (-) | 423 | WP_009896267.1 | hypothetical protein | - |
| A6J95_RS03445 (A6J95_03405) | - | 720006..722336 (-) | 2331 | WP_009896266.1 | hypothetical protein | - |
| A6J95_RS03450 (A6J95_03410) | - | 722336..722503 (-) | 168 | WP_009896264.1 | hypothetical protein | - |
| A6J95_RS03455 (A6J95_03415) | - | 722530..722976 (-) | 447 | WP_009889139.1 | phage tail assembly chaperone | - |
| A6J95_RS03460 (A6J95_03420) | - | 723090..723518 (-) | 429 | WP_009896262.1 | phage tail tube protein | - |
| A6J95_RS03465 (A6J95_03425) | - | 723532..724596 (-) | 1065 | WP_009896260.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| A6J95_RS03470 (A6J95_03430) | - | 724601..725044 (-) | 444 | WP_009896258.1 | phage tail terminator family protein | - |
| A6J95_RS03475 (A6J95_03435) | - | 725293..725733 (-) | 441 | WP_003428183.1 | hypothetical protein | - |
| A6J95_RS03480 (A6J95_03440) | - | 725838..726035 (-) | 198 | WP_003419641.1 | helix-turn-helix transcriptional regulator | - |
| A6J95_RS03485 (A6J95_03445) | - | 726204..726524 (+) | 321 | WP_003428185.1 | XRE family transcriptional regulator | - |
| A6J95_RS03490 (A6J95_03450) | - | 726606..727112 (+) | 507 | WP_003428186.1 | ImmA/IrrE family metallo-endopeptidase | - |
| A6J95_RS03500 (A6J95_03460) | - | 727813..728568 (+) | 756 | WP_009889131.1 | peptidylprolyl isomerase | - |
| A6J95_RS03505 (A6J95_03465) | - | 728711..729139 (-) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| A6J95_RS03510 (A6J95_03470) | - | 729560..729760 (-) | 201 | WP_003419624.1 | cold-shock protein | - |
| A6J95_RS03515 (A6J95_03475) | - | 729943..731097 (-) | 1155 | WP_009902426.1 | amidase domain-containing protein | - |
| A6J95_RS03520 (A6J95_03480) | - | 731348..732169 (+) | 822 | WP_009896253.1 | pyridoxamine kinase | - |
| A6J95_RS03525 (A6J95_03485) | - | 732245..733633 (-) | 1389 | WP_009896251.1 | two-component system sensor histidine kinase | - |
| A6J95_RS03530 (A6J95_03490) | - | 733768..734526 (-) | 759 | WP_009896249.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| A6J95_RS03535 (A6J95_03495) | - | 734528..735244 (-) | 717 | WP_009896246.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| A6J95_RS03540 (A6J95_03500) | - | 735246..735953 (-) | 708 | WP_009896245.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| A6J95_RS03545 (A6J95_03505) | - | 736069..736605 (-) | 537 | WP_003428196.1 | lipoprotein | - |
| A6J95_RS03550 (A6J95_03510) | - | 736707..737777 (-) | 1071 | WP_009896243.1 | DUF4097 family beta strand repeat-containing protein | - |
| A6J95_RS03555 (A6J95_03515) | - | 737770..738852 (-) | 1083 | WP_011861182.1 | DUF1700 domain-containing protein | - |
| A6J95_RS03560 (A6J95_03520) | - | 738839..739171 (-) | 333 | WP_009889116.1 | PadR family transcriptional regulator | - |
| A6J95_RS03565 (A6J95_03525) | - | 739370..740491 (+) | 1122 | WP_003438374.1 | MGDG synthase family glycosyltransferase | - |
| A6J95_RS03570 (A6J95_03530) | - | 740619..742517 (-) | 1899 | WP_003428202.1 | glutamine synthetase | - |
| A6J95_RS03575 (A6J95_03535) | - | 742832..743608 (+) | 777 | WP_009896237.1 | 3'-5' exonuclease | - |
| A6J95_RS03580 (A6J95_03540) | - | 743700..744452 (-) | 753 | WP_003438367.1 | exodeoxyribonuclease III | - |
| A6J95_RS03585 (A6J95_03545) | galT | 744613..745563 (-) | 951 | WP_003438360.1 | galactose-1-phosphate uridylyltransferase | - |
| A6J95_RS03590 (A6J95_03550) | - | 745948..747144 (+) | 1197 | WP_003438357.1 | pyridoxal phosphate-dependent aminotransferase | - |
| A6J95_RS03595 (A6J95_03555) | - | 747479..747931 (-) | 453 | WP_003419561.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| A6J95_RS03600 (A6J95_03560) | purB | 748243..749688 (-) | 1446 | WP_009896234.1 | adenylosuccinate lyase | - |
| A6J95_RS03605 (A6J95_03565) | - | 749832..750740 (-) | 909 | WP_009889110.1 | tyrosine-type recombinase/integrase | - |
| A6J95_RS03610 (A6J95_03570) | - | 750997..751821 (+) | 825 | WP_003438350.1 | undecaprenyl-diphosphate phosphatase | - |
| A6J95_RS03615 (A6J95_03575) | lepB | 751861..752391 (+) | 531 | WP_009896231.1 | signal peptidase I | - |
| A6J95_RS03620 (A6J95_03580) | - | 752473..754254 (-) | 1782 | WP_003438344.1 | UvrD-helicase domain-containing protein | - |
| A6J95_RS03625 (A6J95_03585) | rny | 754889..756430 (-) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| A6J95_RS03630 (A6J95_03590) | recA | 756606..757652 (-) | 1047 | WP_003428218.1 | recombinase RecA | Machinery gene |
| A6J95_RS03635 (A6J95_03595) | pgsA | 757940..758482 (-) | 543 | WP_009889106.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| A6J95_RS03640 (A6J95_03600) | rimO | 758469..759803 (-) | 1335 | WP_003433320.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| A6J95_RS03645 (A6J95_03605) | mnmH | 759797..760855 (-) | 1059 | WP_003433322.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| A6J95_RS03650 (A6J95_03610) | - | 760858..763269 (-) | 2412 | WP_009896226.1 | FtsK/SpoIIIE family DNA translocase | - |
| A6J95_RS03655 (A6J95_03615) | - | 763392..764126 (-) | 735 | WP_003428224.1 | ClpP family protease | - |
| A6J95_RS03660 (A6J95_03620) | dapG | 764239..765462 (-) | 1224 | WP_003438324.1 | aspartate kinase | - |
| A6J95_RS03665 (A6J95_03625) | - | 765472..765717 (-) | 246 | WP_003419503.1 | YlmC/YmxH family sporulation protein | - |
| A6J95_RS03670 (A6J95_03630) | - | 765752..766999 (-) | 1248 | WP_003438321.1 | M16 family metallopeptidase | - |
| A6J95_RS03675 (A6J95_03635) | - | 767157..767900 (-) | 744 | WP_003438319.1 | polysaccharide deacetylase family protein | - |
| A6J95_RS03680 (A6J95_03640) | pnp | 768166..770277 (-) | 2112 | WP_003438316.1 | polyribonucleotide nucleotidyltransferase | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37377.68 Da Isoelectric Point: 4.8236
>NTDB_id=222792 A6J95_RS03630 WP_003428218.1 756606..757652(-) (recA) [Clostridioides difficile strain FDAARGOS_267]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=222792 A6J95_RS03630 WP_003428218.1 756606..757652(-) (recA) [Clostridioides difficile strain FDAARGOS_267]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
Similar proteins
Only experimentally validated proteins are listed.