Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   A6J40_RS05770 Genome accession   NZ_CP020412
Coordinates   1262597..1263640 (-) Length   347 a.a.
NCBI ID   WP_003632198.1    Uniprot ID   -
Organism   Legionella longbeachae strain FDAARGOS_201     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1257597..1268640
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J40_RS18735 (A6J40_05720) - 1258332..1258529 (-) 198 WP_003632194.1 Thivi_2564 family membrane protein -
  A6J40_RS05755 (A6J40_05725) mscL 1258647..1259036 (-) 390 WP_003632195.1 large-conductance mechanosensitive channel protein MscL -
  A6J40_RS05760 (A6J40_05730) alaS 1259138..1261720 (-) 2583 WP_003632196.1 alanine--tRNA ligase -
  A6J40_RS05765 (A6J40_05735) recX 1262134..1262604 (-) 471 WP_003632197.1 recombination regulator RecX -
  A6J40_RS05770 (A6J40_05740) recA 1262597..1263640 (-) 1044 WP_003632198.1 recombinase RecA Machinery gene
  A6J40_RS05775 (A6J40_05745) - 1263891..1264388 (-) 498 WP_003632199.1 CinA family protein -
  A6J40_RS18405 - 1264447..1264605 (-) 159 WP_003632200.1 hypothetical protein -
  A6J40_RS05780 (A6J40_05750) - 1264715..1265434 (-) 720 WP_003632201.1 GMP synthase -
  A6J40_RS05785 (A6J40_05755) - 1265444..1266652 (-) 1209 WP_012978990.1 iron-containing alcohol dehydrogenase -
  A6J40_RS05790 (A6J40_05760) - 1266667..1268055 (-) 1389 WP_041818988.1 aldehyde dehydrogenase family protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37645.15 Da        Isoelectric Point: 5.0697

>NTDB_id=222432 A6J40_RS05770 WP_003632198.1 1262597..1263640(-) (recA) [Legionella longbeachae strain FDAARGOS_201]
MEENKQKALSAALSQIERQFGKGSVMRMGDSSVARDIEAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLQVI
AECQKIGGTAAFIDAEHALDPSYAQKLGVNVDELLVSQPDTGEQALEITDMLVRSGAVDVIIVDSVAALTPKAEIEGEMG
DSHVGLQARLMSQALRKLTANIKRSNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKKGEEILGS
ETRVKVVKNKVAPPFKVTEFDILYNEGISRESEIINLAVQLNLIEKSGAWYSYKGEKIGQGKDNVRLYLKEHSQVAATLE
QQIRTELLEKKLPVPAAAEDEFETIDD

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=222432 A6J40_RS05770 WP_003632198.1 1262597..1263640(-) (recA) [Legionella longbeachae strain FDAARGOS_201]
ATGGAAGAAAATAAACAAAAAGCATTATCAGCTGCCCTTTCGCAAATTGAACGTCAATTTGGAAAAGGATCAGTGATGCG
TATGGGTGACAGCTCTGTGGCCCGTGATATAGAAGCAATTTCAACCGGCTCTTTAGGATTAGATATAGCATTAGGAATTG
GCGGTTTACCTAAAGGTCGAATTGTTGAAATTTATGGTCCTGAGTCTTCTGGTAAAACCACTTTAACTTTACAGGTTATA
GCTGAGTGTCAAAAAATTGGTGGTACTGCTGCATTTATTGATGCGGAACATGCATTAGATCCAAGCTATGCTCAAAAACT
AGGGGTTAATGTTGATGAGTTGCTGGTTTCGCAACCTGATACTGGGGAACAAGCCTTAGAGATCACCGATATGTTGGTAC
GTTCTGGAGCTGTAGATGTAATTATCGTTGACTCTGTTGCAGCACTTACTCCAAAAGCAGAAATTGAAGGGGAAATGGGT
GATTCACATGTTGGCTTACAAGCACGATTAATGTCACAAGCATTACGTAAGCTGACCGCTAATATTAAACGCTCCAATAC
GTTGGTGATTTTTATTAACCAAATTCGTATGAAAATTGGTGTTATGTTTGGTAGTCCTGAAACAACTACCGGTGGAAATG
CATTAAAATTCTACGCCTCTGTCCGTTTGGATATACGGCGCATTGGTTCAATAAAGAAGGGTGAAGAGATTTTAGGAAGT
GAAACCCGAGTTAAAGTAGTTAAGAATAAAGTAGCACCGCCTTTTAAGGTGACGGAATTTGATATTTTATATAATGAAGG
TATTTCTCGTGAGAGTGAAATTATCAATCTGGCTGTTCAACTCAATCTTATTGAAAAGTCAGGTGCTTGGTACAGTTATA
AAGGAGAAAAAATTGGCCAAGGTAAAGATAACGTACGCTTGTATTTAAAAGAGCATTCTCAAGTTGCTGCGACTCTTGAG
CAACAAATTCGTACTGAACTCTTAGAGAAAAAGCTGCCTGTGCCTGCAGCTGCTGAAGACGAATTTGAGACTATTGATGA
CTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

78.049

94.524

0.738
  recA Acinetobacter baylyi ADP1

73.761

98.847

0.729
  recA Acinetobacter baumannii D1279779

73.178

98.847

0.723
  recA Glaesserella parasuis strain SC1401

74.462

93.66

0.697
  recA Vibrio cholerae strain A1552

73.476

94.524

0.695
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.476

94.524

0.695
  recA Neisseria gonorrhoeae MS11

72.531

93.372

0.677
  recA Neisseria gonorrhoeae MS11

72.531

93.372

0.677
  recA Neisseria gonorrhoeae strain FA1090

72.531

93.372

0.677
  recA Ralstonia pseudosolanacearum GMI1000

74.359

89.914

0.669
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.865

95.965

0.622
  recA Helicobacter pylori strain NCTC11637

62.139

99.712

0.62
  recA Helicobacter pylori 26695

62.139

99.712

0.62
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.634

94.524

0.611
  recA Bacillus subtilis subsp. subtilis str. 168

64.798

92.507

0.599
  recA Latilactobacillus sakei subsp. sakei 23K

60

99.424

0.597
  recA Streptococcus pneumoniae D39

60.856

94.236

0.573
  recA Streptococcus pneumoniae R6

60.856

94.236

0.573
  recA Streptococcus pneumoniae TIGR4

60.856

94.236

0.573
  recA Streptococcus pneumoniae Rx1

60.856

94.236

0.573
  recA Streptococcus pyogenes NZ131

60.182

94.813

0.571
  recA Streptococcus mitis SK321

60.55

94.236

0.571
  recA Lactococcus lactis subsp. cremoris KW2

60.494

93.372

0.565
  recA Streptococcus mitis NCTC 12261

59.939

94.236

0.565
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.939

94.236

0.565
  recA Streptococcus mutans UA159

59.756

94.524

0.565

Multiple sequence alignment