Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | CDIF102978_RS07905 | Genome accession | NZ_CP020380 |
| Coordinates | 1560261..1561307 (+) | Length | 348 a.a. |
| NCBI ID | WP_021375046.1 | Uniprot ID | - |
| Organism | Clostridioides difficile strain DSM 102978 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1528342..1605830 | 1560261..1561307 | within | 0 |
Gene organization within MGE regions
Location: 1528342..1605830
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDIF102978_RS07765 (CDIF102978_01544) | - | 1529333..1530001 (-) | 669 | WP_021375051.1 | YwaF family protein | - |
| CDIF102978_RS07770 (CDIF102978_01545) | - | 1530270..1530410 (+) | 141 | WP_021375050.1 | hypothetical protein | - |
| CDIF102978_RS07775 (CDIF102978_01546) | - | 1530585..1530905 (-) | 321 | WP_003428248.1 | MazG-like family protein | - |
| CDIF102978_RS07780 (CDIF102978_01547) | - | 1531025..1531762 (-) | 738 | WP_021375055.1 | NAD-dependent protein deacylase | - |
| CDIF102978_RS07785 (CDIF102978_01548) | acd | 1531977..1533788 (+) | 1812 | WP_021375079.1 | N-acetylglucosaminidase | - |
| CDIF102978_RS07790 (CDIF102978_01549) | - | 1534002..1538300 (+) | 4299 | WP_003428241.1 | PolC-type DNA polymerase III | - |
| CDIF102978_RS07795 (CDIF102978_01550) | rimP | 1538504..1538965 (+) | 462 | WP_003428240.1 | ribosome maturation factor RimP | - |
| CDIF102978_RS07800 (CDIF102978_01551) | nusA | 1538995..1540149 (+) | 1155 | WP_003428238.1 | transcription termination factor NusA | - |
| CDIF102978_RS07805 (CDIF102978_01552) | rnpM | 1540156..1540437 (+) | 282 | WP_003419469.1 | RNase P modulator RnpM | - |
| CDIF102978_RS07810 (CDIF102978_01553) | - | 1540427..1540738 (+) | 312 | WP_003419470.1 | L7Ae/L30e/S12e/Gadd45 family ribosomal protein | - |
| CDIF102978_RS07815 (CDIF102978_01554) | infB | 1540760..1542700 (+) | 1941 | WP_003438306.1 | translation initiation factor IF-2 | - |
| CDIF102978_RS07820 (CDIF102978_01555) | rbfA | 1542743..1543123 (+) | 381 | WP_021375069.1 | 30S ribosome-binding factor RbfA | - |
| CDIF102978_RS07825 (CDIF102978_01556) | - | 1543104..1544087 (+) | 984 | WP_094433833.1 | DHH family phosphoesterase | - |
| CDIF102978_RS07830 (CDIF102978_01557) | truB | 1544100..1545005 (+) | 906 | WP_003428232.1 | tRNA pseudouridine(55) synthase TruB | - |
| CDIF102978_RS07835 (CDIF102978_01558) | - | 1545136..1546065 (+) | 930 | WP_003438310.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| CDIF102978_RS07845 (CDIF102978_01559) | rpsO | 1546169..1546426 (+) | 258 | WP_003419491.1 | 30S ribosomal protein S15 | - |
| CDIF102978_RS07850 (CDIF102978_01560) | - | 1546666..1547511 (+) | 846 | WP_009889099.1 | DegV family protein | - |
| CDIF102978_RS07855 (CDIF102978_01561) | pnp | 1547636..1549747 (+) | 2112 | WP_003438316.1 | polyribonucleotide nucleotidyltransferase | - |
| CDIF102978_RS07860 (CDIF102978_01562) | - | 1550013..1550756 (+) | 744 | WP_065977572.1 | polysaccharide deacetylase family protein | - |
| CDIF102978_RS07865 (CDIF102978_01563) | - | 1550914..1552161 (+) | 1248 | WP_021375063.1 | M16 family metallopeptidase | - |
| CDIF102978_RS07870 (CDIF102978_01564) | - | 1552196..1552441 (+) | 246 | WP_003419503.1 | YlmC/YmxH family sporulation protein | - |
| CDIF102978_RS07875 (CDIF102978_01565) | dapG | 1552451..1553674 (+) | 1224 | WP_003438324.1 | aspartate kinase | - |
| CDIF102978_RS07880 (CDIF102978_01566) | - | 1553787..1554521 (+) | 735 | WP_003428224.1 | ClpP family protease | - |
| CDIF102978_RS07885 (CDIF102978_01567) | - | 1554644..1557055 (+) | 2412 | WP_021375068.1 | FtsK/SpoIIIE family DNA translocase | - |
| CDIF102978_RS07890 (CDIF102978_01568) | mnmH | 1557058..1558116 (+) | 1059 | WP_021375070.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| CDIF102978_RS07895 (CDIF102978_01569) | rimO | 1558110..1559444 (+) | 1335 | WP_065977573.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| CDIF102978_RS07900 (CDIF102978_01570) | pgsA | 1559431..1559973 (+) | 543 | WP_009889106.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| CDIF102978_RS07905 (CDIF102978_01571) | recA | 1560261..1561307 (+) | 1047 | WP_021375046.1 | recombinase RecA | Machinery gene |
| CDIF102978_RS07910 (CDIF102978_01572) | rny | 1561483..1563024 (+) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| CDIF102978_RS07915 (CDIF102978_01573) | - | 1563659..1565440 (+) | 1782 | WP_021375060.1 | UvrD-helicase domain-containing protein | - |
| CDIF102978_RS07920 (CDIF102978_01574) | lepB | 1565522..1566052 (-) | 531 | WP_021387803.1 | signal peptidase I | - |
| CDIF102978_RS07925 (CDIF102978_01575) | - | 1566092..1566916 (-) | 825 | WP_074115256.1 | undecaprenyl-diphosphate phosphatase | - |
| CDIF102978_RS07930 (CDIF102978_01576) | - | 1567173..1568081 (+) | 909 | WP_021375077.1 | tyrosine-type recombinase/integrase | - |
| CDIF102978_RS07935 (CDIF102978_01577) | purB | 1568225..1569670 (+) | 1446 | WP_009889111.1 | adenylosuccinate lyase | - |
| CDIF102978_RS07940 (CDIF102978_01578) | - | 1569981..1570433 (+) | 453 | WP_003428210.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| CDIF102978_RS07945 (CDIF102978_01579) | - | 1570757..1571953 (-) | 1197 | WP_003438357.1 | pyridoxal phosphate-dependent aminotransferase | - |
| CDIF102978_RS07950 (CDIF102978_01580) | galT | 1572338..1573288 (+) | 951 | WP_003428205.1 | galactose-1-phosphate uridylyltransferase | - |
| CDIF102978_RS07955 (CDIF102978_01581) | - | 1573444..1574196 (+) | 753 | WP_021375058.1 | exodeoxyribonuclease III | - |
| CDIF102978_RS07960 (CDIF102978_01582) | - | 1574288..1575064 (-) | 777 | WP_009896237.1 | 3'-5' exonuclease | - |
| CDIF102978_RS07965 (CDIF102978_01583) | - | 1575378..1577276 (+) | 1899 | WP_021375065.1 | glutamine synthetase catalytic domain protein | - |
| CDIF102978_RS07970 (CDIF102978_01584) | - | 1577404..1578525 (-) | 1122 | WP_074115261.1 | MGDG synthase family glycosyltransferase | - |
| CDIF102978_RS07975 (CDIF102978_01585) | - | 1578724..1579056 (+) | 333 | WP_009889116.1 | PadR family transcriptional regulator | - |
| CDIF102978_RS07980 (CDIF102978_01586) | - | 1579043..1580101 (+) | 1059 | WP_032547310.1 | DUF1700 domain-containing protein | - |
| CDIF102978_RS07985 (CDIF102978_01587) | - | 1580094..1581164 (+) | 1071 | WP_021375061.1 | DUF4097 family beta strand repeat-containing protein | - |
| CDIF102978_RS07990 (CDIF102978_01588) | - | 1581266..1581802 (+) | 537 | WP_021375052.1 | lipoprotein | - |
| CDIF102978_RS07995 (CDIF102978_01589) | - | 1581918..1582625 (+) | 708 | WP_021375085.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| CDIF102978_RS08000 (CDIF102978_01590) | - | 1582627..1583343 (+) | 717 | WP_021375064.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| CDIF102978_RS08005 (CDIF102978_01591) | - | 1583345..1584103 (+) | 759 | WP_045145715.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| CDIF102978_RS08010 (CDIF102978_01592) | - | 1584238..1585626 (+) | 1389 | WP_021375047.1 | two-component system sensor histidine kinase | - |
| CDIF102978_RS08015 (CDIF102978_01593) | - | 1585702..1586523 (-) | 822 | WP_003428191.1 | pyridoxamine kinase | - |
| CDIF102978_RS08020 (CDIF102978_01594) | - | 1586774..1587928 (+) | 1155 | WP_009902426.1 | amidase domain-containing protein | - |
| CDIF102978_RS08025 (CDIF102978_01595) | - | 1588111..1588311 (+) | 201 | WP_003419624.1 | cold-shock protein | - |
| CDIF102978_RS08030 (CDIF102978_01596) | - | 1588732..1589160 (+) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| CDIF102978_RS08035 (CDIF102978_01597) | - | 1589303..1590058 (-) | 756 | WP_009889131.1 | peptidylprolyl isomerase | - |
| CDIF102978_RS08045 (CDIF102978_01599) | - | 1590759..1591265 (-) | 507 | WP_003428186.1 | ImmA/IrrE family metallo-endopeptidase | - |
| CDIF102978_RS08050 (CDIF102978_01600) | - | 1591347..1591667 (-) | 321 | WP_021375083.1 | XRE family transcriptional regulator | - |
| CDIF102978_RS08055 (CDIF102978_01601) | - | 1591836..1592057 (+) | 222 | WP_021375081.1 | helix-turn-helix transcriptional regulator | - |
| CDIF102978_RS08060 (CDIF102978_01602) | - | 1592136..1592576 (+) | 441 | WP_009889133.1 | hypothetical protein | - |
| CDIF102978_RS08065 (CDIF102978_01603) | - | 1592825..1593268 (+) | 444 | WP_021375062.1 | phage tail terminator family protein | - |
| CDIF102978_RS08070 (CDIF102978_01604) | - | 1593273..1594337 (+) | 1065 | WP_021375078.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| CDIF102978_RS08075 (CDIF102978_01605) | - | 1594351..1594779 (+) | 429 | WP_021375066.1 | phage tail tube protein | - |
| CDIF102978_RS08080 (CDIF102978_01606) | - | 1594893..1595339 (+) | 447 | WP_021366507.1 | phage tail assembly chaperone | - |
| CDIF102978_RS08085 (CDIF102978_01607) | - | 1595366..1595533 (+) | 168 | WP_003419648.1 | hypothetical protein | - |
| CDIF102978_RS08090 (CDIF102978_01608) | - | 1595533..1597932 (+) | 2400 | WP_077708755.1 | hypothetical protein | - |
| CDIF102978_RS08095 (CDIF102978_01609) | - | 1597938..1598354 (+) | 417 | WP_021375053.1 | phage baseplate protein | - |
| CDIF102978_RS08100 (CDIF102978_01610) | - | 1598540..1600165 (+) | 1626 | WP_418657942.1 | XkdQ/YqbQ family protein | - |
| CDIF102978_RS08105 (CDIF102978_01611) | - | 1600181..1600507 (+) | 327 | WP_021375074.1 | DUF2577 domain-containing protein | - |
| CDIF102978_RS08110 (CDIF102978_01612) | - | 1600507..1600935 (+) | 429 | WP_003428161.1 | DUF2634 domain-containing protein | - |
| CDIF102978_RS08115 (CDIF102978_01613) | - | 1600928..1601980 (+) | 1053 | WP_065986623.1 | baseplate J/gp47 family protein | - |
| CDIF102978_RS08120 (CDIF102978_01614) | - | 1601977..1602675 (+) | 699 | WP_003428156.1 | putative phage tail protein | - |
| CDIF102978_RS08125 (CDIF102978_01615) | - | 1602676..1603662 (+) | 987 | WP_021375149.1 | phage tail protein | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37376.66 Da Isoelectric Point: 4.8236
>NTDB_id=221982 CDIF102978_RS07905 WP_021375046.1 1560261..1561307(+) (recA) [Clostridioides difficile strain DSM 102978]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTNEI
DEKVRAFYNLNEEHEESGTSVSKEVVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTNEI
DEKVRAFYNLNEEHEESGTSVSKEVVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=221982 CDIF102978_RS07905 WP_021375046.1 1560261..1561307(+) (recA) [Clostridioides difficile strain DSM 102978]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGACACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAGTCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAGGATAATTTAGATTTAACGAATGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAGTTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGACACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAGTCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAGGATAATTTAGATTTAACGAATGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAGTTGTAGA
AGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.