Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   B4376_RS08485 Genome accession   NZ_CP020086
Coordinates   1618439..1619500 (+) Length   353 a.a.
NCBI ID   WP_094092397.1    Uniprot ID   -
Organism   Shigella flexneri 1a strain 0670     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1613439..1624500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B4376_RS08455 (B4376_08490) srlD 1613693..1614472 (-) 780 WP_001077344.1 sorbitol-6-phosphate dehydrogenase -
  B4376_RS08460 (B4376_08495) srlB 1614476..1614847 (-) 372 WP_000216201.1 PTS glucitol/sorbitol transporter subunit IIA -
  B4376_RS08465 (B4376_08500) srlE 1614858..1615817 (-) 960 WP_000196934.1 PTS glucitol/sorbitol transporter subunit IIB -
  B4376_RS08470 (B4376_08505) srlA 1615814..1616376 (-) 563 Protein_1524 PTS glucitol/sorbitol transporter subunit IIC -
  B4376_RS08475 (B4376_08510) mltB 1616632..1617717 (+) 1086 WP_005051417.1 lytic murein transglycosylase B -
  B4376_RS08480 (B4376_08515) pncC 1617862..1618359 (+) 498 WP_000132231.1 nicotinamide-nucleotide amidase -
  B4376_RS08485 (B4376_08520) recA 1618439..1619500 (+) 1062 WP_094092397.1 recombinase RecA Machinery gene
  B4376_RS08490 (B4376_08525) recX 1619743..1620243 (+) 501 WP_000140506.1 recombination regulator RecX -
  B4376_RS08495 (B4376_08530) alaS 1620371..1623001 (+) 2631 WP_000047164.1 alanine--tRNA ligase -
  B4376_RS08500 (B4376_08535) csrA 1623236..1623421 (+) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 37999.46 Da        Isoelectric Point: 4.8171

>NTDB_id=220989 B4376_RS08485 WP_094092397.1 1618439..1619500(+) (recA) [Shigella flexneri 1a strain 0670]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEI
EKKVRELLLSNPNSTPDFSVDDIEGVAETNEDF

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=220989 B4376_RS08485 WP_094092397.1 1618439..1619500(+) (recA) [Shigella flexneri 1a strain 0670]
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCACTGGGCCAGATTGAGAAACAATTTGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGTTCCATGGATGTGGAAACCATCTCTACCGGTTCGCTTTCACTGGATATCGCGCTTGGGG
CAGGTGGTCTGCCGATGGGCCGTATCGTCGAAATCTACGGACCGGAATCTTCCGGTAAAACCACGCTGACGCTGCAGGTG
ATCGCCGCAGCGCAGCGTGAAGGTAAAACCTGTGCGTTTATCGATGCTGAACACGCGCTGGACCCAATCTACGCACGTAA
ACTGGGCGTCGATATCGATAACCTGCTGTGCTCCCAGCCGGATACCGGCGAGCAGGCACTGGAAATCTGTGACGCCCTGG
CGCGTTCTGGCGCAGTAGACGTTATCGTCGTTGACTCCGTGGCGGCACTGACGCCGAAAGCGGAAATCGAAGGCGAAATC
GGCGACTCTCACATGGGCCTTGCGGCACGTATGATGAGCCAGGCGATGCGTAAGCTGGCGGGTAACCTGAAGCAGTCCAA
CACGCTGCTGATCTTCATCAACCAGATCCGTATGAAAATTGGTGTGATGTTCGGTAACCCGGAAACCACTACCGGTGGTA
ACGCGCTGAAATTCTACGCCTCTGTTCGTCTCGACATCCGTCGTATCGGCGCGGTGAAAGAGGGCGAAAACGTGGTGGGT
AGCGAAACCCGCGTGAAAGTGGTGAAGAACAAAATCGCTGCACCGTTTAAACAGGCTGAATTTCAGATCCTCTACGGCGA
AGGTATCAACTTCTACGGCGAACTGGTTGACCTGGGCGTAAAAGAGAAGCTGATCGAGAAAGCAGGCGCGTGGTACAGCT
ACAAAGGTGAGAAGATCGGTCAGGGTAAAGCGAATGCAACTGCCTGGCTGAAAGATAACCCGGAAACCGCGAAAGAGATC
GAGAAGAAAGTACGTGAGTTGCTGCTGAGCAACCCGAACTCAACGCCGGATTTCTCTGTAGATGACATCGAAGGAGTAGC
AGAAACTAACGAAGATTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

81.503

98.017

0.799
  recA Vibrio cholerae strain A1552

81.503

98.017

0.799
  recA Pseudomonas stutzeri DSM 10701

74.184

95.467

0.708
  recA Acinetobacter baumannii D1279779

74.085

92.918

0.688
  recA Acinetobacter baylyi ADP1

73.78

92.918

0.686
  recA Glaesserella parasuis strain SC1401

70.71

95.751

0.677
  recA Neisseria gonorrhoeae MS11

69.018

92.351

0.637
  recA Neisseria gonorrhoeae MS11

69.018

92.351

0.637
  recA Neisseria gonorrhoeae strain FA1090

69.018

92.351

0.637
  recA Ralstonia pseudosolanacearum GMI1000

70.159

89.235

0.626
  recA Streptococcus mitis NCTC 12261

60.286

99.15

0.598
  recA Streptococcus mitis SK321

59.829

99.433

0.595
  recA Helicobacter pylori strain NCTC11637

61.721

95.467

0.589
  recA Helicobacter pylori 26695

61.424

95.467

0.586
  recA Streptococcus pneumoniae TIGR4

63.467

91.501

0.581
  recA Streptococcus pneumoniae Rx1

63.467

91.501

0.581
  recA Streptococcus pneumoniae D39

63.467

91.501

0.581
  recA Streptococcus pneumoniae R6

63.467

91.501

0.581
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.654

91.785

0.575
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.661

94.334

0.572
  recA Streptococcus mutans UA159

62.154

92.068

0.572
  recA Streptococcus pyogenes NZ131

62.154

92.068

0.572
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

90.935

0.567
  recA Latilactobacillus sakei subsp. sakei 23K

61.538

92.068

0.567
  recA Lactococcus lactis subsp. cremoris KW2

61.61

91.501

0.564
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.059

90.935

0.555

Multiple sequence alignment