Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CPS_RS18500 Genome accession   NC_003910
Coordinates   4349468..4350505 (-) Length   345 a.a.
NCBI ID   WP_011044870.1    Uniprot ID   Q47WN3
Organism   Colwellia psychrerythraea 34H     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4344468..4355505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPS_RS18475 (CPS_4130) nadB 4345267..4346865 (+) 1599 WP_011044866.1 L-aspartate oxidase -
  CPS_RS24330 - 4346895..4347386 (-) 492 WP_337998950.1 protein YgfX -
  CPS_RS18485 (CPS_4131) - 4347319..4347624 (-) 306 WP_049757932.1 succinate dehydrogenase assembly factor 2 -
  CPS_RS18490 (CPS_4132) ygfZ 4347821..4348795 (+) 975 WP_011044868.1 tRNA-modifying protein YgfZ -
  CPS_RS18495 (CPS_4133) - 4348843..4349334 (+) 492 WP_011044869.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  CPS_RS18500 (CPS_4134) recA 4349468..4350505 (-) 1038 WP_011044870.1 recombinase RecA Machinery gene
  CPS_RS18505 (CPS_4135) - 4350779..4351675 (-) 897 WP_011044871.1 ArgP/LysG family DNA-binding transcriptional regulator -
  CPS_RS18510 (CPS_4136) - 4351798..4352418 (+) 621 WP_011044872.1 LysE/ArgO family amino acid transporter -
  CPS_RS18515 (CPS_4137) mutS 4352552..4355170 (+) 2619 WP_011044873.1 DNA mismatch repair protein MutS -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37362.93 Da        Isoelectric Point: 5.0828

>NTDB_id=22019 CPS_RS18500 WP_011044870.1 4349468..4350505(-) (recA) [Colwellia psychrerythraea 34H]
MKDDKEKALSAALAQIERQFGKGSIMKLGDNTTMDVETISTGSLGLDIALGAGGLPMGRVVEIYGPESSGKTTLTLEVIA
EAQRNGKVCAFIDAEHALDPVYAEKLGVNIDELLISQPDTGEQALEIVDMLTRSGAIDVIVVDSVAALTPKAEIEGDMGD
SHMGLQARMLSQAMRKLTGNLKKSNTMLIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKNGDEIVGNE
TRVKVVKNKIAPPFKQAEFQILYGEGINNLGELIELGVKHEFVEKAGAWYSCNGERIGQGKANAAKYLDEHPEMAKDVDT
KLRDMFLSKTVVAEDKSEVKEKEKA

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=22019 CPS_RS18500 WP_011044870.1 4349468..4350505(-) (recA) [Colwellia psychrerythraea 34H]
ATGAAAGACGATAAAGAAAAAGCACTATCAGCAGCCTTAGCCCAAATTGAACGTCAATTCGGTAAAGGTTCAATAATGAA
GCTTGGTGATAATACCACCATGGATGTAGAAACTATTTCTACGGGTTCATTAGGCTTAGATATCGCCTTAGGTGCTGGCG
GCTTACCAATGGGTCGAGTTGTTGAAATTTATGGTCCTGAATCAAGCGGTAAAACCACGTTAACTTTAGAAGTTATTGCT
GAAGCACAACGCAATGGTAAAGTTTGTGCTTTTATCGATGCAGAGCATGCTCTTGACCCTGTTTATGCTGAAAAATTAGG
TGTTAACATTGATGAGTTATTAATTTCTCAACCTGATACCGGCGAACAAGCTCTAGAAATTGTTGATATGTTAACGCGCT
CTGGTGCTATCGACGTTATTGTAGTTGACTCTGTTGCCGCGCTTACACCTAAAGCTGAAATTGAAGGCGATATGGGTGAT
TCACATATGGGCTTGCAAGCACGTATGTTGTCACAAGCGATGCGTAAACTTACCGGTAATTTGAAAAAATCTAATACTAT
GCTTATCTTCATTAACCAAATTCGTATGAAAATTGGTGTTATGTTTGGTAGCCCAGAAACGACGACCGGTGGTAATGCGT
TAAAATTCTACGCTTCTGTACGTTTAGATATCCGTCGTATTGGCGCGGTTAAAAACGGTGATGAAATCGTTGGTAATGAA
ACGCGTGTGAAAGTCGTTAAAAACAAAATTGCGCCACCGTTTAAACAAGCTGAATTCCAAATTTTATACGGTGAAGGAAT
TAACAACTTAGGTGAGTTAATTGAATTAGGCGTTAAGCATGAGTTTGTAGAGAAAGCAGGTGCTTGGTATAGCTGTAATG
GTGAAAGAATTGGTCAAGGTAAAGCTAATGCTGCTAAATATTTAGATGAACATCCTGAAATGGCTAAAGATGTTGATACT
AAATTACGCGATATGTTTTTATCAAAAACTGTTGTGGCAGAAGATAAATCAGAAGTAAAAGAAAAAGAAAAAGCATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q47WN3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

81.707

95.072

0.777
  recA Vibrio cholerae strain A1552

81.707

95.072

0.777
  recA Pseudomonas stutzeri DSM 10701

71.261

98.841

0.704
  recA Acinetobacter baylyi ADP1

70.968

98.841

0.701
  recA Acinetobacter baumannii D1279779

72.256

95.072

0.687
  recA Glaesserella parasuis strain SC1401

71.166

94.493

0.672
  recA Neisseria gonorrhoeae MS11

71.296

93.913

0.67
  recA Neisseria gonorrhoeae MS11

71.296

93.913

0.67
  recA Neisseria gonorrhoeae strain FA1090

71.296

93.913

0.67
  recA Ralstonia pseudosolanacearum GMI1000

71.197

89.565

0.638
  recA Streptococcus pneumoniae D39

59.827

100

0.6
  recA Streptococcus pneumoniae TIGR4

59.827

100

0.6
  recA Streptococcus pneumoniae Rx1

59.827

100

0.6
  recA Streptococcus pneumoniae R6

59.827

100

0.6
  recA Helicobacter pylori strain NCTC11637

62.769

94.203

0.591
  recA Streptococcus mutans UA159

58.671

100

0.588
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.462

94.203

0.588
  recA Helicobacter pylori 26695

62.462

94.203

0.588
  recA Bacillus subtilis subsp. subtilis str. 168

62.539

93.623

0.586
  recA Streptococcus mitis SK321

61.162

94.783

0.58
  recA Streptococcus mitis NCTC 12261

61.162

94.783

0.58
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.76

96.522

0.577
  recA Streptococcus pyogenes NZ131

60.366

95.072

0.574
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.562

92.754

0.571
  recA Latilactobacillus sakei subsp. sakei 23K

58.383

96.812

0.565
  recA Lactococcus lactis subsp. cremoris KW2

58.642

93.913

0.551

Multiple sequence alignment