Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   BUM88_RS11235 Genome accession   NZ_CP020000
Coordinates   2309932..2310978 (+) Length   348 a.a.
NCBI ID   WP_005040004.1    Uniprot ID   A0AAW8QLK7
Organism   Acinetobacter calcoaceticus strain CA16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2304932..2315978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BUM88_RS11205 (BUM88_11205) kynU 2305501..2306751 (-) 1251 WP_080027273.1 kynureninase -
  BUM88_RS11210 (BUM88_11210) gigD 2306898..2307347 (+) 450 WP_005040015.1 Lrp/AsnC family transcriptional regulator GigD -
  BUM88_RS11215 (BUM88_11215) - 2307389..2307922 (+) 534 WP_080027274.1 GNAT family N-acetyltransferase -
  BUM88_RS11220 (BUM88_11220) - 2307919..2308233 (-) 315 WP_005040011.1 hypothetical protein -
  BUM88_RS11225 (BUM88_11225) - 2308688..2309374 (+) 687 WP_213033705.1 HAD-IA family hydrolase -
  BUM88_RS11230 (BUM88_11230) - 2309358..2309786 (+) 429 WP_004643101.1 RNA-binding S4 domain-containing protein -
  BUM88_RS11235 (BUM88_11235) recA 2309932..2310978 (+) 1047 WP_005040004.1 recombinase RecA Machinery gene
  BUM88_RS11240 (BUM88_11240) - 2311035..2311517 (+) 483 WP_080027275.1 regulatory protein RecX -
  BUM88_RS11250 (BUM88_11250) - 2311943..2312806 (+) 864 WP_080027276.1 YbgF trimerization domain-containing protein -
  BUM88_RS11255 (BUM88_11255) lpxA 2312864..2313652 (-) 789 WP_003652175.1 acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase -
  BUM88_RS11260 (BUM88_11260) fabZ 2313649..2314134 (-) 486 WP_003652176.1 3-hydroxyacyl-ACP dehydratase FabZ -
  BUM88_RS11265 (BUM88_11265) lpxD 2314141..2315211 (-) 1071 WP_080027277.1 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase -
  BUM88_RS11270 (BUM88_11270) - 2315216..2315716 (-) 501 WP_080027278.1 OmpH family outer membrane protein -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37756.08 Da        Isoelectric Point: 4.9278

>NTDB_id=219729 BUM88_RS11235 WP_005040004.1 2309932..2310978(+) (recA) [Acinetobacter calcoaceticus strain CA16]
MDENKSKALQAALSQIEKQFGKNTVMRLGDNTVQAVEAVSTGSLTLDIALGIGGLPKGRIVEIYGPESSGKTTMTLQAIA
QCQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLVRSGAIDMIVVDSVAALTPKAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIVGSE
TRVKVVKNKMAPPFREALFQILYGKGTNQLGELVDLAVQQDIVQKAGAWYSYQGNKIGQGKNNVIRHFEENPQMAGEIER
NIREQLLTTGTNTAQVEDEEEADLLLES

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=219729 BUM88_RS11235 WP_005040004.1 2309932..2310978(+) (recA) [Acinetobacter calcoaceticus strain CA16]
ATGGATGAGAATAAAAGCAAAGCATTACAAGCCGCGCTAAGTCAAATTGAGAAACAATTTGGCAAAAATACGGTGATGCG
TCTCGGTGACAACACTGTTCAAGCTGTTGAAGCTGTATCTACAGGCTCTTTGACTTTAGATATTGCATTGGGGATTGGCG
GTTTACCAAAAGGCCGTATTGTTGAGATTTATGGTCCAGAATCTTCTGGTAAAACCACAATGACTCTACAAGCGATTGCA
CAATGTCAAAAAGCTGGCGGTACTTGTGCATTTATTGATGCAGAGCATGCATTAGATCCACAATATGCGCGTAAACTCGG
TGTAGACATTGATAACTTGCTTGTATCGCAGCCTGATAACGGTGAACAAGCTCTTGAAATTGCGGATATGCTAGTTCGTT
CTGGCGCAATTGATATGATTGTTGTCGACTCAGTCGCTGCACTTACCCCTAAAGCAGAAATTGAAGGTGAGATGGGTGAC
TCTCATATGGGCTTACAAGCTCGCTTAATGAGTCAGGCACTTCGTAAAATTACTGGTAATGCTAAACGCTCAAACTGTAT
GGTTATTTTCATTAACCAGATTCGTATGAAGATTGGGGTAATGTTTGGTAGCCCTGAAACCACGACTGGTGGTAACGCAT
TGAAGTTCTACGCTTCTGTACGTTTAGATATCCGCCGTATTGGTCAAGTAAAAGAAGGCGATGAAATCGTCGGCTCTGAA
ACTCGAGTTAAAGTTGTTAAAAACAAAATGGCTCCTCCTTTCAGAGAGGCTCTTTTCCAAATTCTCTATGGTAAAGGCAC
AAACCAGCTAGGCGAACTTGTAGATTTAGCTGTACAGCAAGATATCGTACAAAAAGCAGGTGCTTGGTATTCATATCAAG
GTAATAAAATTGGTCAAGGTAAGAACAATGTTATTCGCCACTTTGAAGAGAACCCTCAAATGGCTGGAGAGATTGAACGT
AATATCCGTGAACAACTGTTAACAACAGGTACTAATACTGCTCAAGTTGAAGATGAGGAAGAAGCTGATCTTTTATTAGA
ATCTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

95.989

100

0.963
  recA Acinetobacter baylyi ADP1

92.507

99.713

0.922
  recA Pseudomonas stutzeri DSM 10701

74.352

99.713

0.741
  recA Vibrio cholerae strain A1552

73.7

93.966

0.693
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.7

93.966

0.693
  recA Glaesserella parasuis strain SC1401

71.914

93.103

0.67
  recA Neisseria gonorrhoeae MS11

67.953

96.839

0.658
  recA Neisseria gonorrhoeae MS11

67.953

96.839

0.658
  recA Neisseria gonorrhoeae strain FA1090

67.953

96.839

0.658
  recA Ralstonia pseudosolanacearum GMI1000

69.512

94.253

0.655
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.988

98.276

0.609
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.444

95.115

0.603
  recA Helicobacter pylori strain NCTC11637

63.609

93.966

0.598
  recA Helicobacter pylori 26695

63.303

93.966

0.595
  recA Streptococcus mutans UA159

58.739

100

0.589
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.577

93.678

0.586
  recA Streptococcus mitis SK321

58.892

98.563

0.58
  recA Streptococcus mitis NCTC 12261

58.892

98.563

0.58
  recA Streptococcus pneumoniae Rx1

58.43

98.851

0.578
  recA Streptococcus pneumoniae D39

58.43

98.851

0.578
  recA Streptococcus pneumoniae R6

58.43

98.851

0.578
  recA Streptococcus pneumoniae TIGR4

58.43

98.851

0.578
  recA Bacillus subtilis subsp. subtilis str. 168

61.801

92.529

0.572
  recA Streptococcus pyogenes NZ131

60.923

93.391

0.569
  recA Latilactobacillus sakei subsp. sakei 23K

58.567

92.241

0.54
  recA Lactococcus lactis subsp. cremoris KW2

58.204

92.816

0.54

Multiple sequence alignment