Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | CDIF29747_RS06565 | Genome accession | NZ_CP019864 |
| Coordinates | 1343640..1344686 (+) | Length | 348 a.a. |
| NCBI ID | WP_003419530.1 | Uniprot ID | A0AAX3GVV5 |
| Organism | Clostridioides difficile strain DSM 29747 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1338850..1389484 | 1343640..1344686 | within | 0 |
Gene organization within MGE regions
Location: 1338850..1389484
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDIF29747_RS06550 (CDIF29747_01290) | mnmH | 1340458..1341516 (+) | 1059 | WP_003419524.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| CDIF29747_RS06555 (CDIF29747_01291) | rimO | 1341510..1342844 (+) | 1335 | WP_003419527.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| CDIF29747_RS06560 (CDIF29747_01292) | pgsA | 1342831..1343373 (+) | 543 | WP_009905407.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| CDIF29747_RS06565 (CDIF29747_01293) | recA | 1343640..1344686 (+) | 1047 | WP_003419530.1 | recombinase RecA | Machinery gene |
| CDIF29747_RS06570 (CDIF29747_01294) | rny | 1344862..1346403 (+) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| CDIF29747_RS06575 (CDIF29747_01295) | - | 1346713..1349049 (+) | 2337 | WP_003419542.1 | diguanylate cyclase | - |
| CDIF29747_RS06585 | - | 1349855..1349953 (+) | 99 | Protein_1174 | transposase | - |
| CDIF29747_RS06590 (CDIF29747_01296) | tnpB | 1349955..1351073 (+) | 1119 | WP_041160402.1 | IS200/IS605 family element RNA-guided endonuclease TnpB | - |
| CDIF29747_RS06600 (CDIF29747_01297) | - | 1351405..1353186 (+) | 1782 | WP_003419546.1 | UvrD-helicase domain-containing protein | - |
| CDIF29747_RS06605 (CDIF29747_01298) | lepB | 1353266..1353796 (-) | 531 | WP_009905409.1 | signal peptidase I | - |
| CDIF29747_RS06610 (CDIF29747_01299) | - | 1353836..1354660 (-) | 825 | WP_009905410.1 | undecaprenyl-diphosphate phosphatase | - |
| CDIF29747_RS06615 (CDIF29747_01300) | - | 1354917..1355828 (+) | 912 | WP_022615208.1 | tyrosine-type recombinase/integrase | - |
| CDIF29747_RS06620 (CDIF29747_01301) | purB | 1355967..1357412 (+) | 1446 | WP_003419557.1 | adenylosuccinate lyase | - |
| CDIF29747_RS06625 (CDIF29747_01302) | - | 1357713..1358165 (+) | 453 | WP_003419561.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| CDIF29747_RS06630 (CDIF29747_01303) | - | 1358384..1359580 (-) | 1197 | WP_003419570.1 | pyridoxal phosphate-dependent aminotransferase | - |
| CDIF29747_RS06635 (CDIF29747_01304) | galT | 1359965..1360915 (+) | 951 | WP_003419573.1 | galactose-1-phosphate uridylyltransferase | - |
| CDIF29747_RS06640 (CDIF29747_01305) | - | 1361036..1361788 (+) | 753 | WP_003419575.1 | exodeoxyribonuclease III | - |
| CDIF29747_RS06645 (CDIF29747_01306) | - | 1361880..1362656 (-) | 777 | WP_003419578.1 | 3'-5' exonuclease | - |
| CDIF29747_RS06650 (CDIF29747_01307) | - | 1362971..1364869 (+) | 1899 | WP_003419583.1 | glutamine synthetase | - |
| CDIF29747_RS06655 (CDIF29747_01308) | - | 1364997..1366118 (-) | 1122 | WP_003419591.1 | MGDG synthase family glycosyltransferase | - |
| CDIF29747_RS06660 (CDIF29747_01309) | - | 1366317..1366649 (+) | 333 | WP_009905416.1 | PadR family transcriptional regulator | - |
| CDIF29747_RS06665 (CDIF29747_01310) | - | 1366636..1367694 (+) | 1059 | WP_003419595.1 | DUF1700 domain-containing protein | - |
| CDIF29747_RS06670 (CDIF29747_01311) | - | 1367687..1368757 (+) | 1071 | WP_003419596.1 | DUF4097 family beta strand repeat-containing protein | - |
| CDIF29747_RS06675 (CDIF29747_01312) | - | 1368859..1369395 (+) | 537 | WP_003419598.1 | hypothetical protein | - |
| CDIF29747_RS06680 (CDIF29747_01313) | - | 1369515..1370222 (+) | 708 | WP_009905418.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| CDIF29747_RS06685 (CDIF29747_01314) | - | 1370224..1370943 (+) | 720 | WP_003419603.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| CDIF29747_RS06690 (CDIF29747_01315) | - | 1370945..1371715 (+) | 771 | WP_003419609.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| CDIF29747_RS06695 (CDIF29747_01316) | - | 1371849..1373240 (+) | 1392 | WP_029158131.1 | sensor histidine kinase | - |
| CDIF29747_RS06700 (CDIF29747_01317) | - | 1373316..1374137 (-) | 822 | WP_003419615.1 | pyridoxamine kinase | - |
| CDIF29747_RS06705 (CDIF29747_01318) | - | 1374388..1375542 (+) | 1155 | WP_009905420.1 | amidase domain-containing protein | - |
| CDIF29747_RS06710 (CDIF29747_01319) | - | 1375725..1375925 (+) | 201 | WP_003419624.1 | cold-shock protein | - |
| CDIF29747_RS06715 (CDIF29747_01320) | - | 1376346..1376774 (+) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| CDIF29747_RS06720 (CDIF29747_01321) | - | 1376917..1377672 (-) | 756 | WP_009889131.1 | peptidylprolyl isomerase | - |
| CDIF29747_RS06730 (CDIF29747_01323) | - | 1378373..1378879 (-) | 507 | WP_003419636.1 | ImmA/IrrE family metallo-endopeptidase | - |
| CDIF29747_RS06735 (CDIF29747_01324) | - | 1378961..1379281 (-) | 321 | WP_003419639.1 | XRE family transcriptional regulator | - |
| CDIF29747_RS06740 (CDIF29747_01325) | - | 1379450..1379647 (+) | 198 | WP_003419641.1 | helix-turn-helix transcriptional regulator | - |
| CDIF29747_RS06745 (CDIF29747_01326) | - | 1379751..1380191 (+) | 441 | WP_003419643.1 | hypothetical protein | - |
| CDIF29747_RS06750 (CDIF29747_01327) | - | 1380440..1380883 (+) | 444 | WP_003419644.1 | phage tail terminator family protein | - |
| CDIF29747_RS06755 (CDIF29747_01328) | - | 1380888..1381952 (+) | 1065 | WP_003419645.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| CDIF29747_RS06760 (CDIF29747_01329) | - | 1381966..1382394 (+) | 429 | WP_003419646.1 | phage tail tube protein | - |
| CDIF29747_RS06765 (CDIF29747_01330) | - | 1382508..1382954 (+) | 447 | WP_003419647.1 | phage tail assembly chaperone | - |
| CDIF29747_RS06775 (CDIF29747_01331) | - | 1383148..1385601 (+) | 2454 | WP_003419649.1 | hypothetical protein | - |
| CDIF29747_RS06780 (CDIF29747_01332) | - | 1385601..1386023 (+) | 423 | WP_003419651.1 | phage baseplate protein | - |
| CDIF29747_RS06785 (CDIF29747_01333) | - | 1386305..1387834 (+) | 1530 | WP_003419653.1 | NlpC/P60 family protein | - |
| CDIF29747_RS06790 (CDIF29747_01334) | - | 1387850..1388176 (+) | 327 | WP_003419655.1 | DUF2577 family protein | - |
| CDIF29747_RS06795 (CDIF29747_01335) | - | 1388176..1388604 (+) | 429 | WP_003419656.1 | DUF2634 domain-containing protein | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37387.68 Da Isoelectric Point: 4.8236
>NTDB_id=218570 CDIF29747_RS06565 WP_003419530.1 1343640..1344686(+) (recA) [Clostridioides difficile strain DSM 29747]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTNEI
DEKVRAFYNLNEEHEEAGNSVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTNEI
DEKVRAFYNLNEEHEEAGNSVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=218570 CDIF29747_RS06565 WP_003419530.1 1343640..1344686(+) (recA) [Clostridioides difficile strain DSM 29747]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGATATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCACTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATACGCAAAAGC
TTTGGGCGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGACTCTCACGTAGGGTTACAAGCTAGACTTATGTCGCAAGCTCTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCATTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGACACAATAAAACAAGGAGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTCGTTAAAAATAAAGTAGCACCTCCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTCTAGATATAGCTGCTGATGTAGATATAGTAAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAGGATAATTTAGATTTAACTAATGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAAGCAGGTAATTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGATATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCACTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATACGCAAAAGC
TTTGGGCGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGACTCTCACGTAGGGTTACAAGCTAGACTTATGTCGCAAGCTCTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCATTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGACACAATAAAACAAGGAGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTCGTTAAAAATAAAGTAGCACCTCCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTCTAGATATAGCTGCTGATGTAGATATAGTAAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAGGATAATTTAGATTTAACTAATGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAAGCAGGTAATTCAGTATCAAAAGAAATTGTAGA
AGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.