Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | CDIF29632_RS06715 | Genome accession | NZ_CP019860 |
| Coordinates | 1399897..1400943 (+) | Length | 348 a.a. |
| NCBI ID | WP_003428218.1 | Uniprot ID | A0A031WFI0 |
| Organism | Clostridioides difficile strain DSM 29632 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1374015..1448654 | 1399897..1400943 | within | 0 |
Gene organization within MGE regions
Location: 1374015..1448654
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDIF29632_RS06580 (CDIF29632_01289) | rimP | 1374370..1374831 (+) | 462 | WP_003438303.1 | ribosome maturation factor RimP | - |
| CDIF29632_RS06585 (CDIF29632_01290) | nusA | 1374861..1376015 (+) | 1155 | WP_003428238.1 | transcription termination factor NusA | - |
| CDIF29632_RS06590 (CDIF29632_01291) | rnpM | 1376022..1376303 (+) | 282 | WP_003419469.1 | RNase P modulator RnpM | - |
| CDIF29632_RS06595 (CDIF29632_01292) | - | 1376293..1376604 (+) | 312 | WP_003419470.1 | L7Ae/L30e/S12e/Gadd45 family ribosomal protein | - |
| CDIF29632_RS06600 (CDIF29632_01293) | infB | 1376626..1378566 (+) | 1941 | WP_003438306.1 | translation initiation factor IF-2 | - |
| CDIF29632_RS06605 (CDIF29632_01294) | rbfA | 1378609..1378989 (+) | 381 | WP_003428234.1 | 30S ribosome-binding factor RbfA | - |
| CDIF29632_RS06610 (CDIF29632_01295) | - | 1378970..1379647 (+) | 678 | Protein_1174 | DHH family phosphoesterase | - |
| CDIF29632_RS06620 (CDIF29632_01296) | tnpB | 1380296..1381414 (+) | 1119 | WP_077770707.1 | IS200/IS605 family element RNA-guided endonuclease TnpB | - |
| CDIF29632_RS06625 (CDIF29632_01297) | - | 1381532..1381837 (+) | 306 | Protein_1176 | DHH family phosphoesterase | - |
| CDIF29632_RS06630 (CDIF29632_01298) | truB | 1381850..1382755 (+) | 906 | WP_003428232.1 | tRNA pseudouridine(55) synthase TruB | - |
| CDIF29632_RS06635 (CDIF29632_01299) | - | 1382886..1383815 (+) | 930 | WP_003438310.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| CDIF29632_RS06645 (CDIF29632_01300) | rpsO | 1383919..1384176 (+) | 258 | WP_003419491.1 | 30S ribosomal protein S15 | - |
| CDIF29632_RS06650 (CDIF29632_01301) | - | 1384416..1385261 (+) | 846 | WP_009889099.1 | DegV family protein | - |
| CDIF29632_RS06655 (CDIF29632_01302) | pnp | 1385386..1387497 (+) | 2112 | WP_003438316.1 | polyribonucleotide nucleotidyltransferase | - |
| CDIF29632_RS06660 (CDIF29632_01303) | - | 1387765..1388508 (+) | 744 | WP_003438319.1 | polysaccharide deacetylase family protein | - |
| CDIF29632_RS06665 (CDIF29632_01304) | - | 1388666..1389913 (+) | 1248 | WP_070537771.1 | M16 family metallopeptidase | - |
| CDIF29632_RS06670 (CDIF29632_01305) | - | 1389948..1390193 (+) | 246 | WP_003419503.1 | YlmC/YmxH family sporulation protein | - |
| CDIF29632_RS06675 (CDIF29632_01306) | dapG | 1390203..1391426 (+) | 1224 | WP_003438324.1 | aspartate kinase | - |
| CDIF29632_RS06685 (CDIF29632_01307) | tnpB | 1392232..1393341 (+) | 1110 | WP_076637467.1 | IS200/IS605 family element RNA-guided endonuclease TnpB | - |
| CDIF29632_RS06690 (CDIF29632_01308) | - | 1393528..1394157 (+) | 630 | WP_021363436.1 | ClpP family protease | - |
| CDIF29632_RS06695 (CDIF29632_01309) | - | 1394280..1396691 (+) | 2412 | WP_003438328.1 | FtsK/SpoIIIE family DNA translocase | - |
| CDIF29632_RS06700 (CDIF29632_01310) | mnmH | 1396694..1397752 (+) | 1059 | WP_003433322.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| CDIF29632_RS06705 (CDIF29632_01311) | rimO | 1397746..1399080 (+) | 1335 | WP_003433320.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| CDIF29632_RS06710 (CDIF29632_01312) | pgsA | 1399067..1399609 (+) | 543 | WP_021370268.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| CDIF29632_RS06715 (CDIF29632_01313) | recA | 1399897..1400943 (+) | 1047 | WP_003428218.1 | recombinase RecA | Machinery gene |
| CDIF29632_RS06720 (CDIF29632_01314) | rny | 1401119..1402660 (+) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| CDIF29632_RS06725 (CDIF29632_01315) | - | 1402974..1405310 (+) | 2337 | WP_070538164.1 | diguanylate cyclase | - |
| CDIF29632_RS06730 (CDIF29632_01316) | - | 1405692..1407473 (+) | 1782 | WP_003438344.1 | UvrD-helicase domain-containing protein | - |
| CDIF29632_RS06735 (CDIF29632_01317) | lepB | 1407555..1408085 (-) | 531 | WP_009902411.1 | signal peptidase I | - |
| CDIF29632_RS06740 (CDIF29632_01318) | - | 1408125..1408949 (-) | 825 | WP_009905410.1 | undecaprenyl-diphosphate phosphatase | - |
| CDIF29632_RS06745 (CDIF29632_01319) | - | 1409206..1410114 (+) | 909 | WP_009889110.1 | tyrosine-type recombinase/integrase | - |
| CDIF29632_RS06750 (CDIF29632_01320) | purB | 1410258..1411703 (+) | 1446 | WP_021363439.1 | adenylosuccinate lyase | - |
| CDIF29632_RS06755 (CDIF29632_01321) | - | 1412014..1412466 (+) | 453 | WP_003419561.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| CDIF29632_RS06760 (CDIF29632_01322) | - | 1412801..1413997 (-) | 1197 | WP_003438357.1 | pyridoxal phosphate-dependent aminotransferase | - |
| CDIF29632_RS06765 (CDIF29632_01323) | galT | 1414382..1415332 (+) | 951 | WP_070538166.1 | galactose-1-phosphate uridylyltransferase | - |
| CDIF29632_RS06770 (CDIF29632_01324) | - | 1415493..1416245 (+) | 753 | WP_003438367.1 | exodeoxyribonuclease III | - |
| CDIF29632_RS06775 (CDIF29632_01325) | - | 1416337..1417113 (-) | 777 | WP_009896237.1 | 3'-5' exonuclease | - |
| CDIF29632_RS06780 (CDIF29632_01326) | - | 1417428..1419326 (+) | 1899 | WP_070538168.1 | glutamine synthetase | - |
| CDIF29632_RS06785 (CDIF29632_01327) | - | 1419454..1420575 (-) | 1122 | WP_003428201.1 | MGDG synthase family glycosyltransferase | - |
| CDIF29632_RS06790 (CDIF29632_01328) | - | 1420774..1421106 (+) | 333 | WP_009889116.1 | PadR family transcriptional regulator | - |
| CDIF29632_RS06795 (CDIF29632_01329) | - | 1421093..1422151 (+) | 1059 | WP_021367719.1 | DUF1700 domain-containing protein | - |
| CDIF29632_RS06800 (CDIF29632_01330) | - | 1422144..1423214 (+) | 1071 | WP_011861183.1 | DUF4097 family beta strand repeat-containing protein | - |
| CDIF29632_RS06805 (CDIF29632_01331) | - | 1423316..1423852 (+) | 537 | WP_003428196.1 | lipoprotein | - |
| CDIF29632_RS06810 (CDIF29632_01332) | - | 1423968..1424675 (+) | 708 | WP_021363440.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| CDIF29632_RS06815 (CDIF29632_01333) | - | 1424677..1425393 (+) | 717 | WP_070538170.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| CDIF29632_RS06820 (CDIF29632_01334) | - | 1425395..1426153 (+) | 759 | WP_021360482.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| CDIF29632_RS06825 (CDIF29632_01335) | - | 1426288..1427676 (+) | 1389 | WP_070538172.1 | two-component system sensor histidine kinase | - |
| CDIF29632_RS06830 (CDIF29632_01336) | - | 1427752..1428573 (-) | 822 | WP_003428191.1 | pyridoxamine kinase | - |
| CDIF29632_RS06835 (CDIF29632_01337) | - | 1428824..1429978 (+) | 1155 | WP_009892989.1 | amidase domain-containing protein | - |
| CDIF29632_RS06840 (CDIF29632_01338) | - | 1430161..1430361 (+) | 201 | WP_003419624.1 | cold-shock protein | - |
| CDIF29632_RS06845 (CDIF29632_01339) | - | 1430782..1431210 (+) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| CDIF29632_RS06850 (CDIF29632_01340) | - | 1431353..1432108 (-) | 756 | WP_009889131.1 | peptidylprolyl isomerase | - |
| CDIF29632_RS06860 (CDIF29632_01342) | - | 1432809..1433315 (-) | 507 | WP_003428186.1 | ImmA/IrrE family metallo-endopeptidase | - |
| CDIF29632_RS06865 (CDIF29632_01343) | - | 1433397..1433717 (-) | 321 | WP_003428185.1 | XRE family transcriptional regulator | - |
| CDIF29632_RS06870 (CDIF29632_01344) | - | 1433886..1434083 (+) | 198 | WP_003419641.1 | helix-turn-helix transcriptional regulator | - |
| CDIF29632_RS06875 (CDIF29632_01345) | - | 1434187..1434627 (+) | 441 | WP_003428183.1 | hypothetical protein | - |
| CDIF29632_RS06880 (CDIF29632_01346) | - | 1434876..1435319 (+) | 444 | WP_021414348.1 | phage tail terminator family protein | - |
| CDIF29632_RS06885 (CDIF29632_01347) | - | 1435324..1436388 (+) | 1065 | WP_003438414.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| CDIF29632_RS06890 (CDIF29632_01348) | - | 1436402..1436830 (+) | 429 | WP_003419646.1 | phage tail tube protein | - |
| CDIF29632_RS06895 (CDIF29632_01349) | - | 1436944..1437390 (+) | 447 | WP_009902432.1 | phage tail assembly chaperone | - |
| CDIF29632_RS06900 (CDIF29632_01350) | - | 1437417..1437584 (+) | 168 | WP_003419648.1 | hypothetical protein | - |
| CDIF29632_RS06905 (CDIF29632_01351) | - | 1437584..1440037 (+) | 2454 | WP_070538174.1 | hypothetical protein | - |
| CDIF29632_RS06910 (CDIF29632_01352) | - | 1440037..1440459 (+) | 423 | WP_003428168.1 | phage baseplate protein | - |
| CDIF29632_RS06915 (CDIF29632_01353) | - | 1440741..1442270 (+) | 1530 | WP_009889145.1 | NlpC/P60 family protein | - |
| CDIF29632_RS06920 (CDIF29632_01354) | - | 1442286..1442612 (+) | 327 | WP_003438447.1 | DUF2577 domain-containing protein | - |
| CDIF29632_RS06925 (CDIF29632_01355) | - | 1442612..1443040 (+) | 429 | WP_003428161.1 | DUF2634 domain-containing protein | - |
| CDIF29632_RS06930 (CDIF29632_01356) | - | 1443033..1444085 (+) | 1053 | WP_021407928.1 | baseplate J/gp47 family protein | - |
| CDIF29632_RS06935 (CDIF29632_01357) | - | 1444082..1444780 (+) | 699 | WP_070538176.1 | putative phage tail protein | - |
| CDIF29632_RS06940 (CDIF29632_01358) | - | 1444781..1445767 (+) | 987 | WP_009902440.1 | phage tail protein | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37377.68 Da Isoelectric Point: 4.8236
>NTDB_id=218554 CDIF29632_RS06715 WP_003428218.1 1399897..1400943(+) (recA) [Clostridioides difficile strain DSM 29632]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=218554 CDIF29632_RS06715 WP_003428218.1 1399897..1400943(+) (recA) [Clostridioides difficile strain DSM 29632]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCCCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCCCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
Similar proteins
Only experimentally validated proteins are listed.