Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   B0D95_RS06925 Genome accession   NZ_CP019799
Coordinates   1549645..1550688 (-) Length   347 a.a.
NCBI ID   WP_078043213.1    Uniprot ID   -
Organism   Cellvibrio sp. PSBB023     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1544645..1555688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B0D95_RS06905 (B0D95_06875) kdsA 1545536..1546387 (-) 852 WP_078043209.1 3-deoxy-8-phosphooctulonate synthase -
  B0D95_RS06910 (B0D95_06880) - 1546460..1548079 (-) 1620 WP_078043210.1 CTP synthase -
  B0D95_RS06915 (B0D95_06885) - 1548332..1548805 (-) 474 WP_078043211.1 regulatory protein RecX -
  B0D95_RS06920 (B0D95_06890) - 1548867..1549433 (-) 567 WP_078043212.1 DUF4136 domain-containing protein -
  B0D95_RS06925 (B0D95_06895) recA 1549645..1550688 (-) 1044 WP_078043213.1 recombinase RecA Machinery gene
  B0D95_RS06930 (B0D95_06900) - 1550814..1551314 (-) 501 WP_078043214.1 CinA family protein -
  B0D95_RS06935 (B0D95_06905) - 1551402..1551734 (-) 333 WP_078043215.1 tryptophan synthase subunit beta -
  B0D95_RS06940 (B0D95_06910) - 1551842..1552882 (-) 1041 WP_078043216.1 hypothetical protein -
  B0D95_RS06945 (B0D95_06915) flgL 1552900..1553814 (-) 915 WP_078043217.1 flagellar hook-associated protein FlgL -
  B0D95_RS06950 (B0D95_06920) flgK 1553859..1555226 (-) 1368 WP_078043218.1 flagellar hook-associated protein FlgK -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37242.80 Da        Isoelectric Point: 5.2980

>NTDB_id=218421 B0D95_RS06925 WP_078043213.1 1549645..1550688(-) (recA) [Cellvibrio sp. PSBB023]
MDANKEKALQAALSQIERQFGKGTVMRMGDKEQVAIPAISTGSLGLDVALGIGGLPKGRIIEIYGPESSGKTTLTLQVIA
EAQRLGGTCAFIDAEHALDPIYASKLGVNVEDLIISQPDTGEQALEVTDMLVRSGAVDVLVVDSVAALTPRAEIEGEMGD
HHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGEEVIGSE
TRVKVVKNKVAPPFKQAEFQILYGSGINRMGEVVDYGVKLGMIDKAGAWYSYQGNKIGQGKNNVMKYLQENPAVAQELEQ
RVRTELLATPALSLSAGGNEVTDDVEM

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=218421 B0D95_RS06925 WP_078043213.1 1549645..1550688(-) (recA) [Cellvibrio sp. PSBB023]
ATGGATGCGAATAAAGAGAAGGCCCTGCAGGCTGCATTGAGCCAAATCGAACGTCAATTCGGTAAAGGTACCGTGATGCG
CATGGGCGACAAAGAACAAGTCGCCATTCCTGCAATTTCAACCGGTTCCCTGGGGCTGGATGTCGCCTTGGGCATTGGCG
GTTTGCCCAAAGGGCGAATCATTGAAATTTACGGTCCTGAATCCTCCGGTAAAACCACTCTTACACTGCAAGTCATTGCC
GAAGCCCAACGCTTGGGCGGCACTTGTGCATTTATCGACGCCGAACATGCACTCGATCCTATTTACGCCTCAAAACTGGG
TGTAAACGTTGAAGATCTCATCATTTCCCAGCCGGATACCGGCGAACAAGCATTGGAAGTCACCGATATGCTGGTGCGTT
CAGGCGCAGTAGACGTGTTGGTTGTCGACTCAGTTGCTGCACTGACTCCGCGCGCAGAAATTGAGGGCGAAATGGGTGAC
CATCACGTTGGTTTACAAGCGCGTTTGATGTCGCAGGCGCTGCGTAAAATCACAGGCAATATTAAAAATGCCAACTGTTT
GGTGATTTTTATTAACCAGATTCGTATGAAAATCGGCGTTATGTTTGGCAACCCTGAAACAACTACCGGTGGTAACGCTC
TCAAGTTCTATGCCTCAGTACGCTTGGATATCCGCCGGATTGGTGCGGTTAAAGAAGGTGAGGAAGTAATCGGCTCCGAA
ACCCGCGTGAAGGTTGTTAAAAACAAAGTAGCGCCACCCTTCAAACAGGCAGAATTCCAAATCCTGTACGGCTCAGGTAT
CAACCGTATGGGCGAAGTTGTGGATTACGGCGTGAAGCTGGGCATGATCGATAAAGCCGGCGCCTGGTACAGCTATCAAG
GCAACAAAATTGGTCAGGGTAAAAACAATGTTATGAAATACCTGCAAGAAAACCCGGCAGTTGCTCAAGAGCTTGAACAG
CGCGTACGCACCGAGCTTCTTGCAACACCTGCGCTGTCATTGAGTGCCGGTGGCAACGAAGTAACAGACGATGTGGAAAT
GTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

80.363

95.389

0.767
  recA Acinetobacter baylyi ADP1

73.199

100

0.732
  recA Acinetobacter baumannii D1279779

76.292

94.813

0.723
  recA Vibrio cholerae strain A1552

70.317

100

0.703
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.317

100

0.703
  recA Glaesserella parasuis strain SC1401

70.058

99.135

0.695
  recA Ralstonia pseudosolanacearum GMI1000

71.818

95.101

0.683
  recA Neisseria gonorrhoeae MS11

66.57

99.135

0.66
  recA Neisseria gonorrhoeae MS11

66.57

99.135

0.66
  recA Neisseria gonorrhoeae strain FA1090

66.57

99.135

0.66
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.749

94.236

0.62
  recA Helicobacter pylori strain NCTC11637

64.22

94.236

0.605
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.142

95.389

0.602
  recA Helicobacter pylori 26695

63.609

94.236

0.599
  recA Latilactobacillus sakei subsp. sakei 23K

61.755

91.931

0.568
  recA Bacillus subtilis subsp. subtilis str. 168

61.059

92.507

0.565
  recA Streptococcus pneumoniae D39

59.146

94.524

0.559
  recA Streptococcus pneumoniae TIGR4

59.146

94.524

0.559
  recA Streptococcus mitis SK321

59.146

94.524

0.559
  recA Streptococcus pneumoniae Rx1

59.146

94.524

0.559
  recA Streptococcus pneumoniae R6

59.146

94.524

0.559
  recA Streptococcus pyogenes NZ131

59.202

93.948

0.556
  recA Streptococcus mitis NCTC 12261

58.841

94.524

0.556
  recA Streptococcus mutans UA159

59.077

93.66

0.553
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.934

91.931

0.542
  recA Lactococcus lactis subsp. cremoris KW2

56

93.66

0.524

Multiple sequence alignment