Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CSF_RS01240 Genome accession   NZ_CP019683
Coordinates   245753..246790 (+) Length   345 a.a.
NCBI ID   WP_089181934.1    Uniprot ID   -
Organism   Campylobacter sputorum bv. faecalis CCUG 20703     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 240753..251790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSF_RS01230 - 243809..244078 (+) 270 WP_089187771.1 hypothetical protein -
  CSF_RS09100 (CSF_0246) - 244130..244276 (+) 147 WP_201260281.1 hypothetical protein -
  CSF_RS01235 (CSF_0247) - 244322..245614 (-) 1293 WP_089181933.1 Na+/H+ antiporter NhaC family protein -
  CSF_RS01240 (CSF_0248) recA 245753..246790 (+) 1038 WP_089181934.1 recombinase RecA Machinery gene
  CSF_RS01245 (CSF_0249) eno 246790..248040 (+) 1251 WP_089188749.1 phosphopyruvate hydratase -
  CSF_RS01250 (CSF_0250) - 248037..248309 (+) 273 WP_089181935.1 hypothetical protein -
  CSF_RS01255 (CSF_0251) - 248323..249072 (+) 750 WP_089187772.1 AMIN domain-containing protein -
  CSF_RS01260 (CSF_0252) - 249085..249402 (-) 318 WP_089187773.1 c-type cytochrome -
  CSF_RS01265 (CSF_0253) rdgB 249405..250019 (-) 615 WP_089187774.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -
  CSF_RS01270 (CSF_0254) aroC 250022..251101 (-) 1080 WP_089187775.1 chorismate synthase -
  CSF_RS01275 (CSF_0255) rnc 251098..251778 (-) 681 WP_201260288.1 ribonuclease III -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37383.55 Da        Isoelectric Point: 5.3021

>NTDB_id=217777 CSF_RS01240 WP_089181934.1 245753..246790(+) (recA) [Campylobacter sputorum bv. faecalis CCUG 20703]
MDENRKKTLDVALKQIDKAFGKGTIIRLGDKQVEPIDSISTGSIGLDIALGIGGIPKGRIIEIYGPESSGKTTLALHIIA
ESQKNGGICAFVDAEHALDVKYAHNLGVDTDNLFVSQPDFGEQALDIVETLSRSGAVDLIVVDSVAALTPKTEIDGDMGD
SHVGLQARLMSQALRKLTGVVHKMNTTIIFINQIRMKIGAMAYGNPETTTGGNALKFYASVRLDVRKIATLKQNDQPIGN
RTRIKVVKNKVAPPFKTAEFDVMYGEGISKEGEIIDYGVKLDIIDKSGAWFSYQDTKLGQGRENSKAYLKEHSEVATEII
DKLKSSIGGLLSGYDEDEKNIDGDE

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=217777 CSF_RS01240 WP_089181934.1 245753..246790(+) (recA) [Campylobacter sputorum bv. faecalis CCUG 20703]
ATGGATGAAAACAGGAAAAAAACTCTTGATGTAGCCTTAAAACAGATTGATAAAGCCTTTGGTAAAGGCACTATTATCAG
ACTTGGCGATAAACAAGTAGAGCCAATTGATTCTATTTCTACTGGATCTATTGGTCTTGATATAGCTCTTGGAATTGGTG
GAATTCCAAAAGGTAGAATTATAGAAATTTATGGACCAGAAAGTTCTGGTAAAACCACACTCGCCTTACATATAATAGCT
GAATCTCAAAAAAATGGCGGAATTTGTGCTTTTGTAGATGCAGAGCACGCACTTGATGTAAAATATGCTCATAATCTTGG
TGTAGATACAGATAATCTTTTTGTATCTCAGCCAGACTTTGGCGAACAAGCTCTTGACATAGTTGAAACTCTTTCAAGAA
GTGGTGCGGTTGATCTTATAGTTGTTGACTCAGTTGCAGCCTTAACTCCAAAAACCGAGATAGATGGCGATATGGGTGAT
TCACATGTTGGTTTGCAAGCAAGGCTTATGTCTCAAGCTTTAAGAAAATTAACAGGTGTCGTTCATAAAATGAATACAAC
TATCATATTTATAAACCAAATTCGTATGAAAATAGGTGCTATGGCTTATGGTAATCCTGAAACAACAACTGGTGGAAATG
CACTTAAATTTTATGCATCGGTTCGTCTTGATGTCAGAAAAATTGCTACTTTAAAGCAAAATGATCAACCAATAGGCAAT
AGAACTAGGATTAAAGTAGTTAAAAACAAGGTCGCACCTCCTTTTAAAACGGCTGAATTTGATGTAATGTATGGAGAGGG
GATTAGCAAAGAAGGCGAGATAATAGACTATGGCGTAAAGCTTGATATTATCGATAAAAGCGGTGCTTGGTTCAGTTATC
AAGACACAAAACTTGGTCAAGGTAGAGAAAACTCAAAAGCTTATTTAAAAGAGCATTCAGAAGTTGCTACTGAGATAATT
GATAAATTAAAAAGTTCTATTGGTGGATTATTGTCCGGTTATGATGAAGATGAAAAAAATATTGATGGAGATGAATGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

80

98.551

0.788
  recA Helicobacter pylori 26695

78.659

95.072

0.748
  recA Helicobacter pylori strain NCTC11637

78.354

95.072

0.745
  recA Acinetobacter baumannii D1279779

61.272

100

0.614
  recA Acinetobacter baylyi ADP1

60.983

100

0.612
  recA Bacillus subtilis subsp. subtilis str. 168

64.923

94.203

0.612
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.253

96.232

0.609
  recA Neisseria gonorrhoeae MS11

64.11

94.493

0.606
  recA Neisseria gonorrhoeae strain FA1090

64.11

94.493

0.606
  recA Neisseria gonorrhoeae MS11

64.11

94.493

0.606
  recA Glaesserella parasuis strain SC1401

63.03

95.652

0.603
  recA Pseudomonas stutzeri DSM 10701

63.303

94.783

0.6
  recA Streptococcus pneumoniae Rx1

60.526

99.13

0.6
  recA Streptococcus pneumoniae R6

60.526

99.13

0.6
  recA Streptococcus mitis SK321

60.526

99.13

0.6
  recA Streptococcus pneumoniae TIGR4

60.526

99.13

0.6
  recA Streptococcus pneumoniae D39

60.526

99.13

0.6
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.997

94.783

0.597
  recA Vibrio cholerae strain A1552

62.997

94.783

0.597
  recA Streptococcus pyogenes NZ131

61.515

95.652

0.588
  recA Streptococcus mitis NCTC 12261

61.585

95.072

0.586
  recA Lactococcus lactis subsp. cremoris KW2

60.606

95.652

0.58
  recA Ralstonia pseudosolanacearum GMI1000

63.578

90.725

0.577
  recA Streptococcus mutans UA159

59.697

95.652

0.571
  recA Latilactobacillus sakei subsp. sakei 23K

60.123

94.493

0.568
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.202

94.493

0.559

Multiple sequence alignment