Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ADP71_RS03535 Genome accession   NZ_CP019644
Coordinates   726606..727649 (-) Length   347 a.a.
NCBI ID   WP_019958718.1    Uniprot ID   -
Organism   Vitreoscilla sp. C1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 721606..732649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ADP71_RS03505 (ADP71_08770) - 721759..722463 (-) 705 WP_019958713.1 lactate utilization protein C -
  ADP71_RS03510 (ADP71_08780) - 722463..723245 (-) 783 WP_019958714.1 (Fe-S)-binding protein -
  ADP71_RS13150 (ADP71_08790) - 723429..723875 (+) 447 WP_171460888.1 GntR family transcriptional regulator -
  ADP71_RS03520 (ADP71_08800) - 723872..724189 (+) 318 WP_171460889.1 FCD domain-containing protein -
  ADP71_RS03525 (ADP71_08810) - 724245..725693 (+) 1449 WP_171460890.1 DEAD/DEAH box helicase -
  ADP71_RS03530 (ADP71_08840) - 725706..726464 (+) 759 WP_019958717.1 IclR family transcriptional regulator -
  ADP71_RS03535 (ADP71_08860) recA 726606..727649 (-) 1044 WP_019958718.1 recombinase RecA Machinery gene
  ADP71_RS03540 (ADP71_08870) - 727671..728093 (-) 423 WP_019958719.1 hypothetical protein -
  ADP71_RS03545 (ADP71_08880) recB 728150..731788 (-) 3639 WP_171460891.1 exodeoxyribonuclease V subunit beta -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37314.76 Da        Isoelectric Point: 4.9592

>NTDB_id=217500 ADP71_RS03535 WP_019958718.1 726606..727649(-) (recA) [Vitreoscilla sp. C1]
MSEDKSKALAAALAQIEKSFGKGAIMKMDGSHKDENLEVISTGSLGLDLALGVGGLPRGRIVEIYGPESSGKTTLCLEAI
AQCQKAGGVCAFIDAENAFDPVYARKLDVKVEDLLVSQPDTGEQALEICDMLVRSGGVDMVVVDSVAALVPKAEIEGEMG
DSHVGLQARLMSQALRKLTGNIKRTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGQIKKGDDILGN
ETRVKVVKNKVAPPFKQAEFDILYGQGVSLEGEIIDIGVKLGIVEKSGAWYSYNGSKIGQGKDNVRLWLIENPAIANEIE
QKIRKEVGINPDNTEGVLDETDGEQPH

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=217500 ADP71_RS03535 WP_019958718.1 726606..727649(-) (recA) [Vitreoscilla sp. C1]
ATGTCAGAAGACAAAAGTAAAGCCTTAGCCGCCGCCTTGGCGCAAATTGAAAAAAGTTTTGGCAAAGGCGCTATCATGAA
AATGGATGGCAGCCACAAAGATGAAAACTTAGAAGTCATTTCGACAGGCTCATTAGGTTTGGATTTGGCATTGGGCGTAG
GCGGTTTGCCTCGCGGTCGCATCGTCGAAATCTATGGTCCTGAGTCTTCAGGTAAAACCACGCTGTGTTTGGAAGCCATT
GCACAATGTCAAAAAGCAGGCGGTGTGTGTGCTTTTATTGATGCGGAAAATGCGTTTGATCCTGTGTATGCACGTAAATT
GGATGTCAAAGTAGAAGATTTGTTGGTATCGCAACCTGATACTGGCGAACAAGCTTTGGAAATCTGCGACATGTTGGTAC
GCTCAGGCGGCGTGGATATGGTCGTGGTCGATTCGGTTGCGGCATTGGTTCCTAAAGCCGAGATTGAAGGCGAAATGGGT
GACAGTCATGTCGGCTTACAAGCGCGTTTAATGAGCCAAGCCTTGCGTAAACTGACTGGCAATATCAAGCGCACCAACAC
TTTGGTGGTCTTCATCAACCAAATTCGCATGAAAATTGGTGTGATGTTCGGCAGCCCAGAAACCACGACTGGTGGTAATG
CGCTGAAATTCTACGCATCGGTGCGTTTGGACATTCGCCGTACTGGTCAAATCAAAAAAGGCGATGACATTTTGGGCAAT
GAAACCCGTGTCAAAGTGGTGAAAAACAAAGTGGCACCACCATTCAAACAAGCTGAATTTGATATTTTGTATGGTCAAGG
TGTCAGTTTAGAAGGCGAAATCATCGATATTGGCGTGAAATTGGGGATTGTCGAAAAATCAGGTGCTTGGTATAGCTACA
ATGGCAGCAAAATCGGTCAAGGTAAAGACAATGTCCGCTTGTGGTTGATTGAAAATCCTGCGATTGCCAATGAAATCGAA
CAGAAAATTCGCAAAGAAGTGGGTATCAATCCCGACAACACCGAAGGTGTGTTGGATGAAACCGATGGCGAACAACCTCA
TTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae MS11

84.726

100

0.847
  recA Neisseria gonorrhoeae strain FA1090

84.726

100

0.847
  recA Neisseria gonorrhoeae MS11

84.726

100

0.847
  recA Ralstonia pseudosolanacearum GMI1000

76.435

95.389

0.729
  recA Pseudomonas stutzeri DSM 10701

73.731

96.542

0.712
  recA Acinetobacter baylyi ADP1

69.653

99.712

0.695
  recA Acinetobacter baumannii D1279779

69.075

99.712

0.689
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.448

96.542

0.68
  recA Vibrio cholerae strain A1552

70.448

96.542

0.68
  recA Glaesserella parasuis strain SC1401

70.393

95.389

0.671
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.465

95.389

0.634
  recA Helicobacter pylori 26695

65.559

95.389

0.625
  recA Helicobacter pylori strain NCTC11637

65.559

95.389

0.625
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.152

95.101

0.62
  recA Bacillus subtilis subsp. subtilis str. 168

64.832

94.236

0.611
  recA Latilactobacillus sakei subsp. sakei 23K

61.516

98.847

0.608
  recA Streptococcus mutans UA159

60.059

97.406

0.585
  recA Streptococcus pneumoniae D39

57.102

100

0.579
  recA Streptococcus pneumoniae TIGR4

57.102

100

0.579
  recA Streptococcus pneumoniae Rx1

57.102

100

0.579
  recA Streptococcus pneumoniae R6

57.102

100

0.579
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.245

94.236

0.568
  recA Streptococcus pyogenes NZ131

59.697

95.101

0.568
  recA Lactococcus lactis subsp. cremoris KW2

58.683

96.254

0.565
  recA Streptococcus mitis NCTC 12261

59.394

95.101

0.565
  recA Streptococcus mitis SK321

59.091

95.101

0.562

Multiple sequence alignment