Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   BW732_RS08020 Genome accession   NZ_CP019609
Coordinates   1679916..1680983 (+) Length   355 a.a.
NCBI ID   WP_077276260.1    Uniprot ID   A0A1Q2D7C2
Organism   Vagococcus penaei strain CD276T     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1674916..1685983
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BW732_RS08000 (BW732_08070) - 1676139..1676771 (-) 633 WP_161485540.1 pentapeptide repeat-containing protein -
  BW732_RS08005 (BW732_08075) sdaAA 1676858..1677730 (-) 873 WP_077276257.1 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha -
  BW732_RS08010 (BW732_08080) sdaAB 1677740..1678399 (-) 660 WP_077276258.1 L-serine ammonia-lyase, iron-sulfur-dependent subunit beta -
  BW732_RS08015 (BW732_08085) - 1678576..1679817 (+) 1242 WP_077276259.1 competence/damage-inducible protein A -
  BW732_RS08020 (BW732_08090) recA 1679916..1680983 (+) 1068 WP_077276260.1 recombinase RecA Machinery gene
  BW732_RS08025 (BW732_08095) rny 1681216..1682769 (+) 1554 WP_418369036.1 ribonuclease Y -
  BW732_RS08030 (BW732_08100) - 1682846..1683721 (+) 876 WP_077276262.1 AraC family transcriptional regulator -
  BW732_RS08035 (BW732_08105) - 1683798..1684895 (+) 1098 WP_077276263.1 Gfo/Idh/MocA family protein -
  BW732_RS08040 (BW732_08110) - 1684892..1685602 (+) 711 WP_077276264.1 ThuA domain-containing protein -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 38443.96 Da        Isoelectric Point: 5.0098

>NTDB_id=216823 BW732_RS08020 WP_077276260.1 1679916..1680983(+) (recA) [Vagococcus penaei strain CD276T]
MSDNRKLALDAALKKIEKDFGKGSIMKLGEKVDQRISTISSGSLALDSALGVGGYPRGRIIEIYGPESSGKTTVALHAIA
SVQKEGGTAAFIDAEHALDPKYAQALGVNIDELLLSQPDTGEQGLNIAEALVSSGAIDIVVIDSVAALVPRAEIDGEMGD
AHVGLQARLMSQALRKLSGTINKTKTIAVFINQIREKVGVMFGNPEITPGGRALKFYATIRLEVRRAEQLKSGTDIVGNR
TKIKVVKNKVAPPFKIAEVDIMYGEGISQEGELLDMASDKDIVNKSGAWYSYQEERIGQGRENVKKFLAEHPEMMEDIYQ
KVRVAYEIDGVIPTPEAKEEADSELPLDLPEKPEK

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=216823 BW732_RS08020 WP_077276260.1 1679916..1680983(+) (recA) [Vagococcus penaei strain CD276T]
ATGTCGGATAATAGAAAATTGGCGTTAGATGCAGCATTAAAAAAGATAGAAAAAGATTTTGGTAAAGGGTCAATTATGAA
ATTAGGTGAAAAGGTTGACCAACGTATTTCAACTATTTCATCAGGATCCTTGGCTCTTGATTCTGCTTTAGGCGTTGGTG
GTTACCCACGTGGACGGATTATTGAAATTTATGGGCCTGAGAGTTCTGGTAAAACAACAGTAGCTTTACATGCTATTGCA
TCTGTCCAAAAAGAAGGTGGAACGGCTGCATTTATTGATGCTGAGCATGCGTTAGATCCTAAGTATGCTCAAGCATTAGG
TGTCAATATTGATGAGTTATTATTATCACAACCTGATACTGGTGAACAAGGCTTAAATATTGCTGAAGCTCTAGTATCAA
GTGGGGCGATTGATATCGTCGTGATTGACTCTGTTGCCGCATTAGTTCCTCGTGCTGAAATTGACGGTGAGATGGGTGAC
GCACATGTTGGGTTACAAGCCCGCTTGATGTCACAAGCACTACGTAAGTTGTCTGGAACAATTAACAAAACGAAAACAAT
TGCTGTTTTCATTAATCAAATTCGTGAAAAAGTGGGAGTTATGTTTGGTAACCCTGAAATAACACCTGGTGGACGTGCGC
TAAAATTTTATGCAACGATTCGTTTAGAAGTCCGTCGTGCTGAACAACTAAAATCTGGTACGGATATTGTTGGTAACCGG
ACTAAAATTAAAGTGGTAAAAAATAAAGTGGCACCGCCATTTAAAATTGCTGAAGTTGATATTATGTACGGAGAGGGTAT
TTCACAAGAAGGTGAACTACTTGATATGGCTTCAGATAAAGACATCGTAAATAAAAGCGGTGCGTGGTACTCTTATCAAG
AAGAACGCATTGGTCAAGGTCGCGAAAACGTGAAGAAATTCCTTGCTGAGCATCCTGAGATGATGGAAGATATCTACCAA
AAAGTTCGTGTTGCCTATGAAATTGATGGCGTGATACCTACGCCAGAAGCAAAAGAAGAAGCAGATAGTGAATTACCACT
TGATCTTCCTGAAAAACCTGAAAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Q2D7C2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

76.836

99.718

0.766
  recA Bacillus subtilis subsp. subtilis str. 168

78.116

92.676

0.724
  recA Streptococcus pneumoniae D39

70.339

99.718

0.701
  recA Streptococcus pneumoniae R6

70.339

99.718

0.701
  recA Streptococcus pneumoniae Rx1

70.339

99.718

0.701
  recA Streptococcus pneumoniae TIGR4

70.339

99.718

0.701
  recA Streptococcus mitis NCTC 12261

68.975

100

0.701
  recA Streptococcus mutans UA159

66.757

100

0.696
  recA Streptococcus mitis SK321

70.725

97.183

0.687
  recA Streptococcus pyogenes NZ131

71.515

92.958

0.665
  recA Lactococcus lactis subsp. cremoris KW2

69.632

91.831

0.639
  recA Neisseria gonorrhoeae strain FA1090

61.383

97.746

0.6
  recA Neisseria gonorrhoeae MS11

61.383

97.746

0.6
  recA Neisseria gonorrhoeae MS11

61.383

97.746

0.6
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.31

92.676

0.577
  recA Acinetobacter baumannii D1279779

58.621

98.028

0.575
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60

95.775

0.575
  recA Ralstonia pseudosolanacearum GMI1000

63.836

89.577

0.572
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.733

90.704

0.569
  recA Pseudomonas stutzeri DSM 10701

57.637

97.746

0.563
  recA Glaesserella parasuis strain SC1401

61.994

90.423

0.561
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.3

90.986

0.558
  recA Vibrio cholerae strain A1552

61.3

90.986

0.558
  recA Acinetobacter baylyi ADP1

61.3

90.986

0.558
  recA Helicobacter pylori strain NCTC11637

59.568

91.268

0.544
  recA Helicobacter pylori 26695

59.568

91.268

0.544

Multiple sequence alignment