Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   BZG29_RS26300 Genome accession   NZ_CP019510
Coordinates   5984677..5985783 (-) Length   368 a.a.
NCBI ID   WP_071321836.1    Uniprot ID   -
Organism   Janthinobacterium sp. LM6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5979677..5990783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BZG29_RS26280 (BZG29_26290) sucC 5980320..5981489 (-) 1170 WP_034788653.1 ADP-forming succinate--CoA ligase subunit beta -
  BZG29_RS26285 (BZG29_26295) - 5981567..5982058 (-) 492 WP_366928687.1 DUF2889 domain-containing protein -
  BZG29_RS26290 (BZG29_26300) - 5982406..5983944 (-) 1539 WP_077408685.1 class I SAM-dependent methyltransferase -
  BZG29_RS26295 (BZG29_26305) recX 5984083..5984538 (-) 456 WP_077408686.1 recombination regulator RecX -
  BZG29_RS26300 (BZG29_26310) recA 5984677..5985783 (-) 1107 WP_071321836.1 recombinase RecA Machinery gene
  BZG29_RS26305 (BZG29_26315) - 5986024..5986758 (+) 735 WP_077408687.1 response regulator transcription factor -
  BZG29_RS26310 (BZG29_26320) - 5986755..5988287 (+) 1533 WP_253192710.1 sensor histidine kinase -
  BZG29_RS26315 (BZG29_26325) - 5988280..5988594 (+) 315 WP_077408688.1 DUF4212 domain-containing protein -
  BZG29_RS26320 (BZG29_26330) - 5988591..5990639 (+) 2049 WP_077408689.1 sodium:solute symporter family protein -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 39069.72 Da        Isoelectric Point: 6.3119

>NTDB_id=216102 BZG29_RS26300 WP_071321836.1 5984677..5985783(-) (recA) [Janthinobacterium sp. LM6]
MDDKKAVVPASEKAKALAAALAQIEKQFGKGSVMRMDASAPIEEVQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGK
TTLTLQTIAEMQKLGGTCAFIDAEHALDVGYAQKLGVNLHELLISQPDTGEQALEICDALVRSGSVDLVVIDSVAALTPR
AEIEGDMGDSLPGLQARLMSQALRKLTGSINRTNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGSIK
SGDEVIGNETKVKVVKNKIAPPFKEAHFDILYGAGTSREGEILDLGSDAKIVEKSGSWYSYNGERIGQGKDNARAFLQER
PALAREIENKVRASLGVRELPPLAAEKPEKADKAADKAAKAAEAKAAE

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=216102 BZG29_RS26300 WP_071321836.1 5984677..5985783(-) (recA) [Janthinobacterium sp. LM6]
ATGGACGATAAAAAAGCTGTAGTACCCGCATCGGAAAAAGCCAAGGCGCTCGCCGCCGCACTGGCGCAGATCGAGAAGCA
GTTTGGCAAAGGTTCGGTCATGCGCATGGATGCCAGCGCACCGATCGAAGAAGTGCAAGTCGTGTCGACCGGTTCGCTCG
GCCTCGATATCGCGCTGGGCGTGGGCGGCTTGCCGCGCGGCCGCGTGGTAGAGATCTACGGTCCGGAATCGTCGGGTAAA
ACCACGCTGACCCTGCAAACCATTGCTGAAATGCAAAAACTGGGCGGCACTTGCGCCTTTATCGATGCCGAGCACGCGCT
CGACGTCGGTTACGCGCAAAAGCTGGGCGTGAACCTGCATGAATTGCTGATCTCGCAACCGGACACGGGCGAACAGGCAC
TGGAAATCTGCGACGCCCTCGTGCGTTCGGGCAGCGTCGACCTGGTCGTCATCGACTCCGTGGCCGCGCTGACGCCACGC
GCCGAGATCGAAGGCGACATGGGTGATTCCCTGCCCGGCCTGCAAGCGCGTCTGATGTCGCAAGCCCTGCGCAAGCTGAC
CGGTTCCATCAACCGCACGAATACCCTGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGCC
CTGAAACGACCACCGGCGGCAATGCGCTGAAATTCTACGCCTCCGTGCGCCTGGACATCCGCCGCACGGGCTCGATCAAG
TCCGGCGATGAAGTGATCGGCAACGAAACCAAGGTCAAGGTCGTCAAGAACAAGATCGCGCCGCCGTTCAAGGAAGCGCA
CTTCGACATCCTGTACGGCGCCGGCACCTCGCGCGAAGGCGAAATCCTGGACCTGGGTTCGGATGCCAAGATCGTGGAAA
AATCCGGTTCGTGGTACAGCTACAACGGCGAACGCATCGGCCAGGGCAAGGACAATGCCCGTGCCTTCCTGCAAGAGCGT
CCGGCGCTGGCCCGCGAGATCGAAAACAAGGTCCGCGCTTCGCTGGGCGTGCGCGAACTGCCGCCGCTGGCCGCTGAAAA
GCCGGAAAAAGCGGATAAAGCTGCCGACAAGGCTGCCAAGGCTGCGGAAGCCAAGGCCGCCGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(15-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

83.929

91.304

0.766
  recA Neisseria gonorrhoeae MS11

72.866

89.13

0.649
  recA Neisseria gonorrhoeae MS11

72.866

89.13

0.649
  recA Neisseria gonorrhoeae strain FA1090

72.866

89.13

0.649
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.412

92.391

0.641
  recA Vibrio cholerae strain A1552

69.412

92.391

0.641
  recA Glaesserella parasuis strain SC1401

66.571

94.293

0.628
  recA Pseudomonas stutzeri DSM 10701

70.898

87.772

0.622
  recA Acinetobacter baylyi ADP1

70.588

87.772

0.62
  recA Acinetobacter baumannii D1279779

70.279

87.772

0.617
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.366

90.489

0.601
  recA Helicobacter pylori 26695

62.391

93.207

0.582
  recA Streptococcus mutans UA159

60.34

95.924

0.579
  recA Helicobacter pylori strain NCTC11637

62.099

93.207

0.579
  recA Bacillus subtilis subsp. subtilis str. 168

64.526

88.859

0.573
  recA Streptococcus mitis NCTC 12261

60.29

93.75

0.565
  recA Streptococcus pyogenes NZ131

63.222

89.402

0.565
  recA Streptococcus pneumoniae TIGR4

62.236

89.946

0.56
  recA Streptococcus pneumoniae Rx1

62.236

89.946

0.56
  recA Streptococcus pneumoniae D39

62.236

89.946

0.56
  recA Streptococcus pneumoniae R6

62.236

89.946

0.56
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.997

88.859

0.56
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.19

88.587

0.56
  recA Latilactobacillus sakei subsp. sakei 23K

62.424

89.674

0.56
  recA Streptococcus mitis SK321

61.934

89.946

0.557
  recA Lactococcus lactis subsp. cremoris KW2

61.631

89.946

0.554

Multiple sequence alignment