Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PspS35_RS06480 Genome accession   NZ_CP019431
Coordinates   1453112..1454170 (+) Length   352 a.a.
NCBI ID   WP_032891767.1    Uniprot ID   A0A031IMP9
Organism   Pseudomonas sp. S35     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1448112..1459170
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PspS35_RS06465 (PspS35_06570) - 1450820..1451554 (+) 735 WP_159937995.1 XRE family transcriptional regulator -
  PspS35_RS06470 (PspS35_06575) - 1452062..1452406 (+) 345 WP_159933225.1 phage holin family protein -
  PspS35_RS06475 (PspS35_06580) - 1452527..1453027 (+) 501 WP_159933226.1 CinA family protein -
  PspS35_RS06480 (PspS35_06585) recA 1453112..1454170 (+) 1059 WP_032891767.1 recombinase RecA Machinery gene
  PspS35_RS06485 (PspS35_06590) recX 1454179..1454646 (+) 468 WP_159933227.1 recombination regulator RecX -
  PspS35_RS06490 (PspS35_06595) - 1454789..1455901 (-) 1113 WP_159933228.1 TIGR00730 family Rossman fold protein -
  PspS35_RS06495 (PspS35_06600) - 1456193..1456627 (-) 435 WP_124526088.1 PA3611 family quorum-sensing-regulated virulence factor -
  PspS35_RS06500 (PspS35_06605) - 1456807..1457526 (+) 720 WP_159933229.1 tRNA-uridine aminocarboxypropyltransferase -
  PspS35_RS06505 (PspS35_06615) erdR 1457779..1458426 (+) 648 WP_159933230.1 response regulator transcription factor ErdR -
  PspS35_RS06510 (PspS35_06620) - 1458505..1458867 (+) 363 WP_003172176.1 diacylglycerol kinase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37508.06 Da        Isoelectric Point: 5.5108

>NTDB_id=215725 PspS35_RS06480 WP_032891767.1 1453112..1454170(+) (recA) [Pseudomonas sp. S35]
MDDNKKKALAAALGQIERQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVAPPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGSKIGQGKANSAKFLADNPDIAATLEK
QIRDKLLTAAPDVKAAANREPVAEVEEADTDV

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=215725 PspS35_RS06480 WP_032891767.1 1453112..1454170(+) (recA) [Pseudomonas sp. S35]
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAGCGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCACGACCGTCAGGCGATCCCGGCTATCTCCACTGGCTCTCTGGGTCTGGACATCGCACTCGGCATTGGCG
GCCTGCCAAAAGGCCGTATCGTTGAAATCTACGGTCCTGAGTCTTCCGGTAAAACCACCCTGACGCTGTCGGTGATTGCC
CAGGCGCAAAAAATGGGCGCCACCTGCGCGTTCGTCGACGCCGAGCACGCCCTGGACCCTGAATACGCCGGTAAACTGGG
TGTCAACGTTGATGACCTGCTGGTTTCCCAGCCGGACACCGGTGAGCAAGCCCTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCCATCGACGTGATCGTGGTCGACTCCGTGGCCGCTCTGGTGCCGAAGGCTGAAATCGAAGGCGAAATGGGTGAC
ATGCACGTGGGCCTGCAAGCCCGTCTGATGTCCCAGGCGCTGCGTAAAATCACCGGTAACATCAAGAACGCCAACTGCTT
GGTTATCTTCATCAACCAGATCCGTATGAAAATTGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCAC
TGAAGTTCTACGCGTCGGTCCGTCTGGACATCCGCCGTACTGGCGCGGTGAAGGAGGGTGACGAGGTTGTCGGCAGTGAA
ACCCGCGTTAAAGTCGTGAAGAACAAAGTGGCTCCGCCATTCCGTCAGGCAGAATTCCAGATCCTGTACGGCAAGGGTAT
CTACCTGAACGGCGAGATGATCGACTTGGGCGTGCTGCACGGTTTCGTCGAGAAGTCAGGTGCCTGGTATGCCTACAACG
GCAGCAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTCGCAGACAACCCAGATATCGCTGCCACGCTTGAGAAG
CAGATTCGCGACAAGCTGCTGACTGCTGCACCTGACGTGAAAGCTGCCGCCAACCGCGAACCGGTTGCAGAAGTGGAAGA
AGCTGACACTGACGTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A031IMP9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

87.5

100

0.875
  recA Acinetobacter baylyi ADP1

75.893

95.455

0.724
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.875

100

0.719
  recA Vibrio cholerae strain A1552

71.875

100

0.719
  recA Acinetobacter baumannii D1279779

73.178

97.443

0.713
  recA Glaesserella parasuis strain SC1401

69.164

98.58

0.682
  recA Ralstonia pseudosolanacearum GMI1000

70.149

95.17

0.668
  recA Neisseria gonorrhoeae MS11

72.222

92.045

0.665
  recA Neisseria gonorrhoeae MS11

72.222

92.045

0.665
  recA Neisseria gonorrhoeae strain FA1090

72.222

92.045

0.665
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.526

92.898

0.599
  recA Helicobacter pylori strain NCTC11637

59.375

100

0.594
  recA Helicobacter pylori 26695

58.807

100

0.588
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.677

94.886

0.585
  recA Bacillus subtilis subsp. subtilis str. 168

61.682

91.193

0.562
  recA Streptococcus mitis SK321

55.398

100

0.554
  recA Streptococcus mutans UA159

60

92.33

0.554
  recA Streptococcus mitis NCTC 12261

55.114

100

0.551
  recA Streptococcus pyogenes NZ131

58.232

93.182

0.543
  recA Streptococcus pneumoniae Rx1

58.589

92.614

0.543
  recA Streptococcus pneumoniae D39

58.589

92.614

0.543
  recA Streptococcus pneumoniae R6

58.589

92.614

0.543
  recA Streptococcus pneumoniae TIGR4

58.589

92.614

0.543
  recA Latilactobacillus sakei subsp. sakei 23K

58.879

91.193

0.537
  recA Lactococcus lactis subsp. cremoris KW2

57.276

91.761

0.526
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.748

92.614

0.526

Multiple sequence alignment