Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FORC53_RS28835 Genome accession   NZ_CP019292
Coordinates   762647..763699 (-) Length   350 a.a.
NCBI ID   WP_118895397.1    Uniprot ID   A0AAN1PWT5
Organism   Vibrio vulnificus strain FORC_053     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 757647..768699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC53_RS28805 (FORC53_5442) - 758011..759489 (-) 1479 WP_118895395.1 DotG/IcmE/VirB10 family protein -
  FORC53_RS28810 (FORC53_5443) - 759504..760577 (-) 1074 WP_118895396.1 DotH/IcmK family type IV secretion protein -
  FORC53_RS28815 (FORC53_5444) - 760594..761250 (-) 657 WP_053318285.1 DotI/IcmL/TraM family protein -
  FORC53_RS28820 (FORC53_5445) - 761253..761549 (-) 297 WP_053318284.1 hypothetical protein -
  FORC53_RS28830 (FORC53_5446) - 762219..762641 (-) 423 WP_038129339.1 hypothetical protein -
  FORC53_RS28835 (FORC53_5447) recA 762647..763699 (-) 1053 WP_118895397.1 recombinase RecA Machinery gene
  FORC53_RS28840 (FORC53_5448) - 764251..765207 (+) 957 WP_198434347.1 hypothetical protein -
  FORC53_RS28845 (FORC53_5449) - 765207..765764 (+) 558 WP_118895399.1 hypothetical protein -
  FORC53_RS28850 (FORC53_5450) - 765778..766440 (-) 663 WP_053318279.1 DsbA family protein -
  FORC53_RS28855 (FORC53_5451) - 766513..767499 (+) 987 WP_116921106.1 hypothetical protein -
  FORC53_RS28860 (FORC53_5452) - 767576..768685 (+) 1110 WP_118895400.1 S1 family peptidase -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 37737.31 Da        Isoelectric Point: 5.3374

>NTDB_id=214621 FORC53_RS28835 WP_118895397.1 762647..763699(-) (recA) [Vibrio vulnificus strain FORC_053]
MSKQAKNTDKSKALESALSQIEKQFGKGSIMRLGDNRTMDIETVPTGSLALDIALGAGGLPMGRIVEIYGPESSGKTTLT
LELVAQAQKLGKTCAFIDAEHALDPVYARKLGVDINSLLVSQPDTGEQALEICDALARSGAVDLMIVDSVAALTPKAEIE
GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCVFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKSGDE
VVGNETRIKVVKNKIAAPFKEANTQIMYGKGFNRTGEILDLSVKNGLIDKSGAWFSMNGNQIGQGREKACAELERLGILE
ELYTKIMEIHKSSVTEDSANAEEAILETEE

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=214621 FORC53_RS28835 WP_118895397.1 762647..763699(-) (recA) [Vibrio vulnificus strain FORC_053]
ATGTCAAAACAAGCAAAAAACACCGATAAGTCAAAAGCTTTAGAATCTGCACTTTCTCAAATTGAAAAACAGTTTGGTAA
AGGTTCGATTATGCGACTTGGCGATAACCGAACTATGGATATCGAAACCGTCCCAACTGGCTCTCTTGCTCTGGATATTG
CATTGGGTGCAGGCGGTCTTCCTATGGGTCGTATCGTTGAGATTTATGGACCTGAAAGCTCAGGTAAAACAACTCTAACT
CTTGAATTGGTTGCTCAAGCTCAAAAGCTTGGTAAAACCTGTGCGTTTATCGATGCTGAACACGCTCTAGATCCTGTATA
CGCTAGAAAGTTGGGTGTTGATATCAACTCACTTCTAGTTTCACAACCTGATACAGGAGAGCAAGCACTTGAGATCTGTG
ATGCTCTAGCTCGTTCAGGAGCAGTTGACTTAATGATTGTTGACTCTGTTGCCGCATTGACACCTAAAGCCGAAATTGAA
GGTGAGATGGGTGATAGTCATATGGGTCTTCAGGCACGAATGCTTTCTCAGGCTATGCGCAAGCTTACTGGCAACTTGAA
ACAATCAAACTGCATGTGTGTTTTCATTAACCAAATCCGAATGAAAATTGGCGTTATGTTCGGCAATCCCGAGACAACGA
CAGGCGGGAACGCATTAAAATTCTACGCTTCAGTCCGTCTTGATATTCGTCGCACAGGCGCTATCAAATCAGGCGATGAA
GTTGTTGGTAACGAAACTCGAATCAAAGTCGTTAAGAACAAAATTGCTGCTCCATTCAAAGAAGCAAATACTCAAATTAT
GTATGGCAAAGGATTTAACCGCACAGGTGAGATTCTTGATCTATCAGTCAAAAACGGTCTAATTGACAAGTCTGGTGCAT
GGTTCTCAATGAACGGCAATCAAATTGGTCAGGGTCGTGAAAAGGCATGTGCCGAACTAGAGCGCTTAGGTATTCTTGAA
GAGCTTTACACTAAGATTATGGAGATTCATAAGTCTAGTGTTACTGAAGACTCTGCTAACGCAGAAGAAGCGATTCTTGA
AACAGAAGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(12-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

84.74

88

0.746
  recA Vibrio cholerae O1 biovar El Tor strain E7946

84.74

88

0.746
  recA Acinetobacter baylyi ADP1

67.442

98.286

0.663
  recA Acinetobacter baumannii D1279779

71.207

92.286

0.657
  recA Glaesserella parasuis strain SC1401

73.397

89.143

0.654
  recA Neisseria gonorrhoeae MS11

64.516

97.429

0.629
  recA Neisseria gonorrhoeae MS11

64.516

97.429

0.629
  recA Neisseria gonorrhoeae strain FA1090

64.516

97.429

0.629
  recA Pseudomonas stutzeri DSM 10701

71.104

88

0.626
  recA Ralstonia pseudosolanacearum GMI1000

71.525

84.286

0.603
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.377

95.429

0.586
  recA Helicobacter pylori strain NCTC11637

60.429

93.143

0.563
  recA Helicobacter pylori 26695

60.123

93.143

0.56
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.059

91.714

0.56
  recA Streptococcus mitis SK321

60.559

92

0.557
  recA Streptococcus mitis NCTC 12261

60.559

92

0.557
  recA Lactococcus lactis subsp. cremoris KW2

59.633

93.429

0.557
  recA Streptococcus pneumoniae TIGR4

60.185

92.571

0.557
  recA Streptococcus pneumoniae Rx1

60.185

92.571

0.557
  recA Streptococcus pneumoniae D39

60.185

92.571

0.557
  recA Streptococcus pneumoniae R6

60.185

92.571

0.557
  recA Bacillus subtilis subsp. subtilis str. 168

64.238

86.286

0.554
  recA Streptococcus pyogenes NZ131

62.623

87.143

0.546
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.165

88.286

0.54
  recA Streptococcus mutans UA159

61.967

87.143

0.54
  recA Latilactobacillus sakei subsp. sakei 23K

62.458

86

0.537

Multiple sequence alignment