Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   BMF08_RS00425 Genome accession   NZ_CP019113
Coordinates   77882..78946 (-) Length   354 a.a.
NCBI ID   WP_072570037.1    Uniprot ID   A0AAT9UYX5
Organism   Enterobacter sp. SA187     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 72882..83946
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BMF08_RS00410 csrA 74119..74304 (-) 186 WP_000906486.1 carbon storage regulator CsrA -
  BMF08_RS00415 alaS 74547..77174 (-) 2628 WP_072570039.1 alanine--tRNA ligase -
  BMF08_RS00420 recX 77304..77810 (-) 507 WP_072570038.1 recombination regulator RecX -
  BMF08_RS00425 recA 77882..78946 (-) 1065 WP_072570037.1 recombinase RecA Machinery gene
  BMF08_RS00430 pncC 79036..79533 (-) 498 WP_072570036.1 nicotinamide-nucleotide amidase -
  BMF08_RS00435 mltB 79663..80745 (-) 1083 WP_072570035.1 lytic murein transglycosylase B -
  BMF08_RS00440 srlA 81016..81579 (+) 564 WP_072570146.1 PTS glucitol/sorbitol transporter subunit IIC -
  BMF08_RS00445 - 81576..82529 (+) 954 WP_072570034.1 PTS glucitol/sorbitol transporter subunit IIB -
  BMF08_RS00450 srlB 82543..82905 (+) 363 WP_072570033.1 PTS glucitol/sorbitol transporter subunit IIA -
  BMF08_RS00455 srlD 82920..83699 (+) 780 WP_072570032.1 sorbitol-6-phosphate dehydrogenase -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38216.51 Da        Isoelectric Point: 4.8235

>NTDB_id=213121 BMF08_RS00425 WP_072570037.1 77882..78946(-) (recA) [Enterobacter sp. SA187]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQRQGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVLVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKFIEKAGAWYSYNGEKIGQGKANATTWLKENPETAKEI
EKKVRDALLSNPDTKPDFTVDDNDEHAKEGDEDF

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=213121 BMF08_RS00425 WP_072570037.1 77882..78946(-) (recA) [Enterobacter sp. SA187]
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCACTGGGCCAGATCGAAAAGCAATTCGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGTTCCATGGATGTGGAAACTATCTCCACCGGTTCGCTTTCTCTGGATATTGCACTGGGCG
CAGGCGGTTTGCCGATGGGCCGTATCGTAGAAATCTACGGGCCGGAATCCTCAGGTAAAACAACCTTAACCCTTCAGGTT
ATCGCGGCGGCGCAGCGTCAGGGTAAAACCTGTGCGTTTATCGATGCTGAACATGCGCTGGATCCTGTCTACGCACGTAA
GCTGGGCGTGGATATTGATAACCTGCTGTGTTCTCAGCCGGATACCGGTGAGCAGGCGCTGGAAATCTGTGACGCGCTCG
CGCGCTCAGGCGCCGTTGACGTGCTGGTGGTTGACTCGGTTGCAGCGCTGACCCCGAAAGCCGAAATTGAAGGCGAAATC
GGTGACTCTCACATGGGCCTCGCGGCACGTATGATGAGCCAGGCGATGCGTAAACTGGCGGGTAACCTTAAGCAGTCCAA
TACGCTGCTGATCTTCATCAACCAGATCCGTATGAAAATCGGTGTGATGTTCGGTAACCCGGAAACCACCACCGGCGGTA
ACGCGCTGAAATTCTACGCTTCCGTGCGTCTCGACATCCGCCGTATCGGCGCGGTGAAAGAGGGCGATAACGTAGTGGGC
AGCGAAACCCGCGTGAAGGTTGTGAAGAACAAGATCGCCGCGCCGTTCAAACAGGCTGAATTCCAGATCCTCTACGGGGA
AGGTATTAACTTCTACGGCGAACTGGTTGACCTGGGCGTGAAAGAGAAGTTCATCGAGAAAGCAGGTGCATGGTACAGCT
ACAACGGTGAGAAAATCGGTCAGGGTAAAGCGAACGCCACTACCTGGCTGAAAGAGAACCCGGAAACGGCGAAGGAAATT
GAGAAGAAAGTGCGTGACGCGCTGCTCAGTAATCCGGATACCAAGCCTGACTTCACCGTTGATGACAACGATGAACACGC
GAAAGAAGGCGACGAAGATTTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

84.29

93.503

0.788
  recA Vibrio cholerae O1 biovar El Tor strain E7946

84.29

93.503

0.788
  recA Pseudomonas stutzeri DSM 10701

73.021

96.328

0.703
  recA Acinetobacter baylyi ADP1

71.06

98.588

0.701
  recA Acinetobacter baumannii D1279779

71.72

96.893

0.695
  recA Glaesserella parasuis strain SC1401

71.345

96.61

0.689
  recA Neisseria gonorrhoeae MS11

69.753

91.525

0.638
  recA Neisseria gonorrhoeae MS11

69.753

91.525

0.638
  recA Neisseria gonorrhoeae strain FA1090

69.753

91.525

0.638
  recA Ralstonia pseudosolanacearum GMI1000

70.476

88.983

0.627
  recA Streptococcus pneumoniae TIGR4

59.885

98.588

0.59
  recA Streptococcus pneumoniae Rx1

59.885

98.588

0.59
  recA Streptococcus pneumoniae D39

59.885

98.588

0.59
  recA Streptococcus pneumoniae R6

59.885

98.588

0.59
  recA Helicobacter pylori strain NCTC11637

61.128

95.198

0.582
  recA Helicobacter pylori 26695

60.831

95.198

0.579
  recA Streptococcus mutans UA159

62.462

91.808

0.573
  recA Lactococcus lactis subsp. cremoris KW2

62.462

91.808

0.573
  recA Streptococcus mitis NCTC 12261

62.848

91.243

0.573
  recA Streptococcus mitis SK321

62.848

91.243

0.573
  recA Latilactobacillus sakei subsp. sakei 23K

61.774

92.373

0.571
  recA Streptococcus pyogenes NZ131

62.154

91.808

0.571
  recA Bacillus subtilis subsp. subtilis str. 168

62.928

90.678

0.571
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.162

92.373

0.565
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.639

93.785

0.559
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.923

91.808

0.559

Multiple sequence alignment