Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LPB137_RS13290 Genome accession   NZ_CP019070
Coordinates   2733686..2734729 (+) Length   347 a.a.
NCBI ID   WP_076088875.1    Uniprot ID   A0A1P8KQ71
Organism   Poseidonibacter parvus strain LPB0137     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2728686..2739729
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB137_RS13270 (LPB137_13270) trmA 2729246..2730382 (+) 1137 WP_076088867.1 tRNA (uridine(54)-C5)-methyltransferase TrmA -
  LPB137_RS13275 (LPB137_13275) - 2730444..2731766 (+) 1323 WP_076088869.1 ATP-binding protein -
  LPB137_RS14685 (LPB137_13280) - 2731922..2733256 (+) 1335 WP_076088871.1 flagellin -
  LPB137_RS13285 (LPB137_13285) - 2733374..2733574 (+) 201 WP_076088873.1 hypothetical protein -
  LPB137_RS13290 (LPB137_13290) recA 2733686..2734729 (+) 1044 WP_076088875.1 recombinase RecA Machinery gene
  LPB137_RS13295 (LPB137_13295) eno 2734891..2736165 (+) 1275 WP_076088877.1 phosphopyruvate hydratase -
  LPB137_RS13300 (LPB137_13300) - 2736176..2736418 (+) 243 WP_076088879.1 septum formation initiator -
  LPB137_RS13305 (LPB137_13305) - 2736415..2737185 (+) 771 WP_076088881.1 AMIN domain-containing protein -
  LPB137_RS13310 (LPB137_13310) - 2737156..2738319 (-) 1164 WP_076088883.1 cation:proton antiporter -
  LPB137_RS13315 (LPB137_13315) - 2738327..2739208 (-) 882 WP_076088885.1 biotin synthase -
  LPB137_RS13320 (LPB137_13320) - 2739198..2739710 (-) 513 WP_076088887.1 metallophosphoesterase family protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37348.91 Da        Isoelectric Point: 4.7942

>NTDB_id=212939 LPB137_RS13290 WP_076088875.1 2733686..2734729(+) (recA) [Poseidonibacter parvus strain LPB0137]
MDDNQKKSLDLAIKQIDKAFGKGTLIRLGDKEVIPTEAISTGSLGLDLALGVGGLPQGRVIEIYGPESSGKTTLTLHAIA
ECQKAGGVCAFIDAEHALDTAYAKNLGVDIDNLLVSQPDFGEQALEILETVIRSGAVDLVVIDSVAALTPKVEIDGDMDD
QQVGVQARLMSKALRKITGLLNKMQCTVIFINQIRMKIGMTGYGSPETTTGGNALKFYSSVRLDIRRIATLKQGDNSIGN
RVKVKVVKNKVAAPFKLAEFDIMFGEGISKMGELVDYGVKLDIVDKAGAWFSYGDSKIGQGKENSKVFLRDNPEIAKEIE
NKILAAMGVNDEILEGTIKDPKDSEED

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=212939 LPB137_RS13290 WP_076088875.1 2733686..2734729(+) (recA) [Poseidonibacter parvus strain LPB0137]
ATGGACGATAATCAAAAAAAATCACTAGACTTAGCAATAAAACAAATAGATAAAGCATTCGGAAAAGGTACTTTAATTAG
ACTTGGGGATAAAGAAGTAATACCAACAGAAGCAATTAGTACTGGTTCTTTAGGTCTTGATTTAGCTTTAGGTGTTGGTG
GTCTTCCACAAGGTAGAGTTATTGAGATTTATGGACCAGAATCTTCTGGTAAAACTACTTTAACACTTCATGCAATTGCT
GAATGTCAAAAAGCTGGTGGTGTTTGTGCATTTATTGATGCAGAACATGCACTTGATACTGCATATGCTAAAAATCTTGG
TGTTGATATTGATAATTTACTTGTATCTCAACCTGATTTTGGTGAGCAAGCTTTAGAGATATTAGAAACTGTTATAAGAT
CTGGGGCTGTTGATTTAGTTGTAATTGATTCAGTTGCAGCTTTAACTCCAAAAGTTGAGATTGATGGAGATATGGATGAT
CAACAAGTTGGTGTTCAAGCTAGACTTATGTCTAAGGCTTTAAGAAAAATTACTGGTTTATTAAATAAAATGCAATGTAC
TGTAATCTTTATTAACCAAATTAGAATGAAAATCGGTATGACAGGATACGGATCTCCTGAAACAACTACTGGTGGAAATG
CACTTAAATTCTACTCTTCTGTAAGACTTGATATTAGAAGAATTGCAACACTTAAACAAGGTGATAATTCAATTGGAAAT
AGAGTTAAAGTAAAAGTTGTAAAAAATAAAGTAGCAGCTCCATTTAAACTAGCAGAATTTGACATCATGTTTGGTGAGGG
TATTTCTAAAATGGGTGAGCTTGTTGATTATGGTGTTAAACTTGATATTGTTGATAAAGCCGGAGCTTGGTTCTCTTATG
GTGATTCAAAAATTGGTCAAGGTAAAGAAAATTCTAAAGTATTCCTAAGAGATAATCCAGAAATTGCAAAAGAGATTGAA
AACAAGATCTTAGCAGCTATGGGTGTAAATGATGAGATTCTTGAAGGAACTATTAAAGATCCAAAAGACAGCGAAGAAGA
CTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1P8KQ71

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

73.913

99.424

0.735
  recA Helicobacter pylori strain NCTC11637

74.551

96.254

0.718
  recA Helicobacter pylori 26695

74.251

96.254

0.715
  recA Neisseria gonorrhoeae MS11

63.006

99.712

0.628
  recA Neisseria gonorrhoeae MS11

63.006

99.712

0.628
  recA Neisseria gonorrhoeae strain FA1090

63.006

99.712

0.628
  recA Acinetobacter baylyi ADP1

67.5

92.219

0.622
  recA Acinetobacter baumannii D1279779

66.873

93.084

0.622
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.329

94.524

0.608
  recA Ralstonia pseudosolanacearum GMI1000

62.952

95.677

0.602
  recA Glaesserella parasuis strain SC1401

59.942

98.559

0.591
  recA Vibrio cholerae strain A1552

61.194

96.542

0.591
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.194

96.542

0.591
  recA Pseudomonas stutzeri DSM 10701

62.08

94.236

0.585
  recA Bacillus subtilis subsp. subtilis str. 168

60.423

95.389

0.576
  recA Streptococcus mutans UA159

58.982

96.254

0.568
  recA Streptococcus pneumoniae TIGR4

56.812

99.424

0.565
  recA Streptococcus pneumoniae Rx1

56.812

99.424

0.565
  recA Streptococcus pneumoniae D39

56.812

99.424

0.565
  recA Streptococcus pneumoniae R6

56.812

99.424

0.565
  recA Streptococcus pyogenes NZ131

59.394

95.101

0.565
  recA Streptococcus mitis NCTC 12261

58.912

95.389

0.562
  recA Lactococcus lactis subsp. cremoris KW2

58.788

95.101

0.559
  recA Streptococcus mitis SK321

58.61

95.389

0.559
  recA Latilactobacillus sakei subsp. sakei 23K

57.751

94.813

0.548
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.716

93.372

0.539

Multiple sequence alignment