Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | PG_RS03890 | Genome accession | NC_002950 |
| Coordinates | 943203..944225 (+) | Length | 340 a.a. |
| NCBI ID | WP_004584116.1 | Uniprot ID | A0A0E2LLY6 |
| Organism | Porphyromonas gingivalis W83 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 905735..942497 | 943203..944225 | flank | 706 |
Gene organization within MGE regions
Location: 905735..944225
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PG_RS11640 | - | 905767..905889 (-) | 123 | Protein_755 | DNA methylase | - |
| PG_RS03715 | - | 905915..906996 (-) | 1082 | Protein_756 | IS5 family transposase | - |
| PG_RS03720 (PG0846) | - | 907093..907602 (-) | 510 | Protein_757 | site-specific integrase | - |
| PG_RS03725 (PG0847) | - | 907993..909474 (+) | 1482 | WP_394357727.1 | helicase-related protein | - |
| PG_RS03730 (PG0848) | - | 909579..910577 (-) | 999 | WP_010956139.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | - |
| PG_RS03735 (PG0849) | - | 910562..911269 (-) | 708 | WP_005874356.1 | DUF6088 family protein | - |
| PG_RS03740 (PG0850) | - | 911360..911668 (-) | 309 | WP_005874351.1 | helix-turn-helix domain-containing protein | - |
| PG_RS03745 (PG0851) | - | 911656..912909 (-) | 1254 | Protein_762 | AAA family ATPase | - |
| PG_RS03750 | - | 913013..914094 (+) | 1082 | Protein_763 | IS5 family transposase | - |
| PG_RS11645 | - | 914119..914289 (+) | 171 | WP_080502141.1 | DNA methylase | - |
| PG_RS03755 (PG0853) | - | 914524..915009 (+) | 486 | WP_005874045.1 | HU family DNA-binding protein | - |
| PG_RS03760 (PG0854) | - | 915046..915828 (+) | 783 | WP_004584112.1 | DUF4393 domain-containing protein | - |
| PG_RS03765 (PG0856) | - | 916330..917235 (+) | 906 | WP_005874039.1 | hypothetical protein | - |
| PG_RS03770 (PG0857) | - | 917459..917683 (+) | 225 | WP_005874043.1 | helix-turn-helix transcriptional regulator | - |
| PG_RS03775 (PG0858) | - | 917680..918015 (+) | 336 | WP_005874041.1 | HipA N-terminal domain-containing protein | - |
| PG_RS03780 (PG0859) | - | 918005..918943 (+) | 939 | WP_010956143.1 | HipA domain-containing protein | - |
| PG_RS03785 (PG0860) | - | 919013..919333 (+) | 321 | WP_043876418.1 | helix-turn-helix domain-containing protein | - |
| PG_RS03790 (PG0861) | - | 919435..922869 (+) | 3435 | WP_250697966.1 | helicase-related protein | - |
| PG_RS03795 (PG0862) | - | 922880..926278 (+) | 3399 | WP_010956144.1 | Eco57I restriction-modification methylase domain-containing protein | - |
| PG_RS11650 | - | 926268..926867 (-) | 600 | WP_316896392.1 | TaqI-like C-terminal specificity domain-containing protein | - |
| PG_RS11655 | - | 926787..927056 (+) | 270 | WP_230456014.1 | hypothetical protein | - |
| PG_RS03805 (PG0864) | - | 927139..927759 (-) | 621 | WP_005874044.1 | master DNA invertase Mpi family serine-type recombinase | - |
| PG_RS03810 (PG0865) | - | 927856..928986 (-) | 1131 | WP_004584862.1 | ISAs1-like element ISPg2 family transposase | - |
| PG_RS03815 (PG0866) | - | 929123..930268 (+) | 1146 | WP_005874176.1 | ADP-ribosylglycohydrolase family protein | - |
| PG_RS03820 (PG0867) | - | 930328..931023 (-) | 696 | WP_005874182.1 | hypothetical protein | - |
| PG_RS03825 (PG0868) | - | 931020..931943 (-) | 924 | WP_005874212.1 | relaxase/mobilization nuclease domain-containing protein | - |
| PG_RS03830 (PG0869) | - | 931940..932287 (-) | 348 | WP_039418494.1 | MobC family plasmid mobilization relaxosome protein | - |
| PG_RS03835 (PG0870) | - | 932394..933452 (-) | 1059 | WP_005874198.1 | DUF6371 domain-containing protein | - |
| PG_RS03840 (PG0871) | - | 933550..934926 (-) | 1377 | WP_005874156.1 | DUF3987 domain-containing protein | - |
| PG_RS03845 (PG0872) | - | 934936..935295 (-) | 360 | WP_005874216.1 | helix-turn-helix domain-containing protein | - |
| PG_RS03850 | - | 935557..936162 (+) | 606 | WP_043876420.1 | hypothetical protein | - |
| PG_RS03855 (PG0873) | - | 936200..936898 (-) | 699 | WP_005874206.1 | hypothetical protein | - |
| PG_RS03860 (PG0874) | - | 937000..938103 (-) | 1104 | WP_005874222.1 | site-specific integrase | - |
| PG_RS03865 (PG0875) | - | 938192..939094 (-) | 903 | WP_010956146.1 | helix-turn-helix domain-containing protein | - |
| PG_RS03870 (PG0876) | mnmE | 939340..940764 (-) | 1425 | WP_005874231.1 | tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE | - |
| PG_RS03875 (PG0877) | - | 940928..941839 (-) | 912 | WP_005874194.1 | hypothetical protein | - |
| PG_RS10985 | - | 942187..942458 (-) | 272 | Protein_791 | conjugative transposon protein TraJ | - |
| PG_RS03885 (PG0880) | bcp | 942727..943182 (+) | 456 | WP_005874193.1 | thioredoxin-dependent thiol peroxidase | - |
| PG_RS03890 (PG0881) | recA | 943203..944225 (+) | 1023 | WP_004584116.1 | recombinase RecA | Machinery gene |
Sequence
Protein
Download Length: 340 a.a. Molecular weight: 36888.28 Da Isoelectric Point: 5.5493
>NTDB_id=21208 PG_RS03890 WP_004584116.1 943203..944225(+) (recA) [Porphyromonas gingivalis W83]
MAEEKIPTVQDEKKLQALRMATEKIEKTFGKGAIMNMGANTVEDVSVIPSGSIGLDLALGVGGYPRGRIIEIYGPESSGK
TTLAIHAIAEAQKAGGLAAIIDAEHAFDRTYAEKLGVNVDNLWIAQPDNGEQALEIAEQLIRSSAVDIIVIDSVAALTPK
AEIEGEMGDNKVGLHARLMSQALRKMTGAISKSNTTCIFINQLREKIGVLFGNPETTTGGNALKFYASIRIDIRKSTPIK
DGEEIMGHLTKVKVLKNKVAPPFRKAEFDIVFGEGISRSGEIIDLGVELDIIKKSGSWFSYGDTKLGQGREAAKEMIRDN
EELAEELTEKIREAIRNKHS
MAEEKIPTVQDEKKLQALRMATEKIEKTFGKGAIMNMGANTVEDVSVIPSGSIGLDLALGVGGYPRGRIIEIYGPESSGK
TTLAIHAIAEAQKAGGLAAIIDAEHAFDRTYAEKLGVNVDNLWIAQPDNGEQALEIAEQLIRSSAVDIIVIDSVAALTPK
AEIEGEMGDNKVGLHARLMSQALRKMTGAISKSNTTCIFINQLREKIGVLFGNPETTTGGNALKFYASIRIDIRKSTPIK
DGEEIMGHLTKVKVLKNKVAPPFRKAEFDIVFGEGISRSGEIIDLGVELDIIKKSGSWFSYGDTKLGQGREAAKEMIRDN
EELAEELTEKIREAIRNKHS
Nucleotide
Download Length: 1023 bp
>NTDB_id=21208 PG_RS03890 WP_004584116.1 943203..944225(+) (recA) [Porphyromonas gingivalis W83]
ATGGCAGAAGAAAAGATACCCACGGTGCAGGATGAGAAGAAACTGCAAGCCCTGCGAATGGCCACGGAGAAGATAGAGAA
GACTTTCGGAAAAGGTGCTATCATGAATATGGGAGCCAATACGGTGGAAGATGTAAGCGTTATCCCCTCCGGCTCCATCG
GTTTGGATTTGGCTCTCGGTGTAGGCGGTTACCCTCGCGGACGTATTATCGAGATATACGGACCGGAATCTTCCGGTAAG
ACCACTCTGGCTATCCATGCCATTGCCGAAGCGCAGAAAGCAGGTGGCTTGGCGGCCATCATCGATGCGGAACATGCTTT
CGACCGCACCTATGCCGAAAAGTTGGGCGTCAATGTGGATAATCTCTGGATAGCACAGCCGGACAACGGTGAACAGGCTT
TGGAAATCGCCGAGCAACTGATTCGCTCTTCTGCTGTCGACATTATAGTCATTGACTCTGTCGCAGCCCTCACGCCCAAA
GCGGAAATAGAGGGTGAAATGGGGGACAACAAGGTTGGTTTGCATGCCCGTCTGATGTCGCAAGCACTGCGTAAGATGAC
CGGAGCCATCAGCAAATCCAATACAACCTGTATCTTCATCAACCAGCTACGAGAGAAGATCGGTGTTTTGTTCGGCAATC
CGGAGACCACCACAGGGGGGAATGCACTGAAATTCTATGCATCCATCCGCATCGACATTCGCAAGAGCACACCGATCAAG
GATGGCGAAGAGATCATGGGACACCTGACCAAGGTGAAAGTGTTGAAAAACAAGGTGGCTCCTCCATTCCGCAAAGCAGA
GTTCGACATCGTATTCGGAGAAGGTATTTCGCGTTCCGGCGAGATTATCGATTTGGGTGTAGAGCTGGATATTATCAAGA
AGAGCGGATCGTGGTTCAGCTATGGCGATACGAAGCTGGGACAGGGACGTGAGGCTGCCAAGGAAATGATTCGGGACAAT
GAGGAATTGGCCGAAGAACTGACTGAAAAAATACGCGAAGCCATTCGCAACAAACATTCATAA
ATGGCAGAAGAAAAGATACCCACGGTGCAGGATGAGAAGAAACTGCAAGCCCTGCGAATGGCCACGGAGAAGATAGAGAA
GACTTTCGGAAAAGGTGCTATCATGAATATGGGAGCCAATACGGTGGAAGATGTAAGCGTTATCCCCTCCGGCTCCATCG
GTTTGGATTTGGCTCTCGGTGTAGGCGGTTACCCTCGCGGACGTATTATCGAGATATACGGACCGGAATCTTCCGGTAAG
ACCACTCTGGCTATCCATGCCATTGCCGAAGCGCAGAAAGCAGGTGGCTTGGCGGCCATCATCGATGCGGAACATGCTTT
CGACCGCACCTATGCCGAAAAGTTGGGCGTCAATGTGGATAATCTCTGGATAGCACAGCCGGACAACGGTGAACAGGCTT
TGGAAATCGCCGAGCAACTGATTCGCTCTTCTGCTGTCGACATTATAGTCATTGACTCTGTCGCAGCCCTCACGCCCAAA
GCGGAAATAGAGGGTGAAATGGGGGACAACAAGGTTGGTTTGCATGCCCGTCTGATGTCGCAAGCACTGCGTAAGATGAC
CGGAGCCATCAGCAAATCCAATACAACCTGTATCTTCATCAACCAGCTACGAGAGAAGATCGGTGTTTTGTTCGGCAATC
CGGAGACCACCACAGGGGGGAATGCACTGAAATTCTATGCATCCATCCGCATCGACATTCGCAAGAGCACACCGATCAAG
GATGGCGAAGAGATCATGGGACACCTGACCAAGGTGAAAGTGTTGAAAAACAAGGTGGCTCCTCCATTCCGCAAAGCAGA
GTTCGACATCGTATTCGGAGAAGGTATTTCGCGTTCCGGCGAGATTATCGATTTGGGTGTAGAGCTGGATATTATCAAGA
AGAGCGGATCGTGGTTCAGCTATGGCGATACGAAGCTGGGACAGGGACGTGAGGCTGCCAAGGAAATGATTCGGGACAAT
GAGGAATTGGCCGAAGAACTGACTGAAAAAATACGCGAAGCCATTCGCAACAAACATTCATAA
Similar proteins
Only experimentally validated proteins are listed.