Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   BVG93_RS00765 Genome accession   NZ_CP018926
Coordinates   180462..181526 (+) Length   354 a.a.
NCBI ID   WP_004932541.1    Uniprot ID   A0AAT9EFP1
Organism   Serratia marcescens strain UMH6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 175462..186526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVG93_RS00745 (BVG93_00750) chbR 176471..177319 (+) 849 WP_089191198.1 transcriptional regulator ChbR -
  BVG93_RS00750 (BVG93_00755) chbG 177468..178229 (+) 762 WP_042783711.1 chitin disaccharide deacetylase -
  BVG93_RS00755 (BVG93_00760) - 178239..179618 (-) 1380 WP_033641904.1 MFS transporter -
  BVG93_RS00760 (BVG93_00765) pncC 179862..180350 (+) 489 WP_089191199.1 nicotinamide-nucleotide amidase -
  BVG93_RS00765 (BVG93_00770) recA 180462..181526 (+) 1065 WP_004932541.1 recombinase RecA Machinery gene
  BVG93_RS00770 (BVG93_00775) recX 181587..182102 (+) 516 WP_089191200.1 recombination regulator RecX -
  BVG93_RS25180 - 182143..182286 (-) 144 WP_162180460.1 hypothetical protein -
  BVG93_RS00775 (BVG93_00780) alaS 182236..184863 (+) 2628 WP_089191201.1 alanine--tRNA ligase -
  BVG93_RS00780 (BVG93_00785) csrA 185116..185301 (+) 186 WP_004091602.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 37909.34 Da        Isoelectric Point: 4.8181

>NTDB_id=211958 BVG93_RS00765 WP_004932541.1 180462..181526(+) (recA) [Serratia marcescens strain UMH6]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVG
SETRVKVVKNKIAAPFKQAEFQIMYGEGINSRGELVDLGVKHKMIEKAGAWYSYNGEKIGQGKANACNFLKENPAIAAEL
DKKLRDLLLHSGGELVAASGDDFEDDEAETSEQF

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=211958 BVG93_RS00765 WP_004932541.1 180462..181526(+) (recA) [Serratia marcescens strain UMH6]
ATGGCTATTGATGAGAACAAGCAAAAGGCGTTAGCTGCGGCACTGGGCCAGATTGAGAAACAGTTCGGCAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGCTCCATGGACGTGGAAACCATCTCCACCGGCTCACTGTCACTCGATATCGCTCTGGGCG
CCGGCGGCCTGCCGATGGGCCGCATCGTCGAAATCTACGGCCCGGAATCGTCCGGTAAAACCACCCTGACGCTGCAGGTG
ATCGCCGCCGCGCAGCGCGAAGGCAAAACCTGTGCGTTCATCGATGCCGAGCACGCGCTGGATCCTATCTATGCGAAGAA
GCTGGGCGTCGATATCGACAACCTGCTGTGCTCTCAGCCGGACACCGGCGAGCAGGCTCTGGAAATCTGTGATGCGCTGA
CCCGCTCCGGCGCGGTTGACGTCATCATCGTTGATTCCGTGGCGGCGTTGACGCCGAAGGCGGAAATCGAAGGTGAAATC
GGCGATTCGCACATGGGGTTGGCGGCGCGCATGATGAGCCAGGCGATGCGTAAGCTGGCCGGCAACCTGAAAAATGCCAA
TACCCTGCTGATCTTCATCAACCAGATCCGTATGAAAATTGGTGTGATGTTCGGCAACCCGGAAACCACTACCGGTGGTA
ACGCTCTGAAGTTCTATGCTTCGGTGCGTCTGGATATCCGTCGTATCGGTGCCATCAAAGAGGGCGACGAAGTGGTGGGC
AGCGAAACCCGCGTGAAAGTGGTGAAGAACAAAATCGCTGCGCCGTTCAAACAGGCTGAGTTCCAAATCATGTACGGCGA
AGGCATCAACAGCCGTGGCGAACTGGTCGATCTGGGCGTGAAGCACAAGATGATCGAAAAAGCCGGCGCCTGGTACAGCT
ATAACGGCGAGAAGATCGGTCAGGGCAAGGCGAATGCCTGTAACTTCCTGAAAGAAAACCCGGCTATCGCCGCCGAGCTG
GATAAGAAGCTGCGCGACCTGCTGCTGCACAGCGGCGGTGAGCTGGTGGCTGCCTCCGGTGACGACTTCGAAGATGACGA
AGCAGAAACCAGCGAGCAGTTCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

83.237

97.74

0.814
  recA Vibrio cholerae strain A1552

83.237

97.74

0.814
  recA Pseudomonas stutzeri DSM 10701

72.674

97.175

0.706
  recA Acinetobacter baumannii D1279779

70.64

97.175

0.686
  recA Glaesserella parasuis strain SC1401

69.253

98.305

0.681
  recA Acinetobacter baylyi ADP1

70.262

96.893

0.681
  recA Neisseria gonorrhoeae MS11

68.712

92.09

0.633
  recA Neisseria gonorrhoeae MS11

68.712

92.09

0.633
  recA Neisseria gonorrhoeae strain FA1090

68.712

92.09

0.633
  recA Ralstonia pseudosolanacearum GMI1000

70.418

87.853

0.619
  recA Streptococcus pneumoniae Rx1

60.571

98.87

0.599
  recA Streptococcus pneumoniae TIGR4

60.571

98.87

0.599
  recA Streptococcus pneumoniae R6

60.571

98.87

0.599
  recA Streptococcus pneumoniae D39

60.571

98.87

0.599
  recA Streptococcus mitis NCTC 12261

61.471

96.045

0.59
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.057

98.305

0.59
  recA Helicobacter pylori strain NCTC11637

62.691

92.373

0.579
  recA Streptococcus mitis SK321

63.158

91.243

0.576
  recA Helicobacter pylori 26695

62.385

92.373

0.576
  recA Streptococcus mutans UA159

62.462

91.808

0.573
  recA Streptococcus pyogenes NZ131

62.462

91.808

0.573
  recA Lactococcus lactis subsp. cremoris KW2

62.848

91.243

0.573
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

90.678

0.565
  recA Latilactobacillus sakei subsp. sakei 23K

61.538

91.808

0.565
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.94

93.785

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.202

92.09

0.545

Multiple sequence alignment