Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LA20249_RS05130 Genome accession   NZ_CP018867
Coordinates   1061420..1062571 (-) Length   383 a.a.
NCBI ID   WP_057736840.1    Uniprot ID   A0A2K9HIS0
Organism   Companilactobacillus alimentarius DSM 20249     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1056420..1067571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LA20249_RS05110 (LA20249_05090) - 1056924..1057562 (+) 639 WP_057736843.1 YigZ family protein -
  LA20249_RS05115 (LA20249_05095) - 1057616..1058368 (-) 753 WP_083477858.1 helix-turn-helix domain-containing protein -
  LA20249_RS05120 (LA20249_05100) - 1058519..1059604 (-) 1086 WP_057736970.1 glycosyltransferase family 4 protein -
  LA20249_RS05125 (LA20249_05105) rny 1059724..1061289 (-) 1566 WP_057736841.1 ribonuclease Y -
  LA20249_RS05130 (LA20249_05110) recA 1061420..1062571 (-) 1152 WP_057736840.1 recombinase RecA Machinery gene
  LA20249_RS05135 (LA20249_05115) - 1062660..1063199 (-) 540 WP_057736839.1 CinA family protein -
  LA20249_RS05140 (LA20249_05120) pgsA 1063224..1063808 (-) 585 WP_057736836.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LA20249_RS05145 (LA20249_05125) - 1063924..1064772 (-) 849 WP_057736834.1 helix-turn-helix domain-containing protein -
  LA20249_RS05150 (LA20249_05130) ymfI 1064838..1065563 (-) 726 WP_162254615.1 elongation factor P 5-aminopentanone reductase -
  LA20249_RS05155 (LA20249_05135) yfmH 1065564..1066802 (-) 1239 WP_057736830.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 383 a.a.        Molecular weight: 41441.99 Da        Isoelectric Point: 5.6752

>NTDB_id=211130 LA20249_RS05130 WP_057736840.1 1061420..1062571(-) (recA) [Companilactobacillus alimentarius DSM 20249]
MAKDERQKALDVALKKIEKDFGKGAIMRMGDDLNTQISTVSTGSLALDNALGVGGFPRGRIVEIYGPESSGKTTVALHAV
AQVQKQGGTAAYIDAENAMDPEYAKALGVNIDDLLLSQPDTGEQGLEIADALVTSGAVDIVVVDSVAALVPRAEIEGEMG
DAHVGLQARLMSQALRKLSGTINKTKTIALFINQIREKVGIMFGNPETTPGGRALKFYATIRLEVRRAEQIKDGSDVIGN
RTKIKVVKNKVAPPFKVALVDIMYGKGISQTGELVDMAVEKDIIDKSGSWYSYGDERIGQGRENAKTYLSENPEKMDEIR
KKVREAYGMDGAKKSDDDSKDSKDSKDSKEDSKDSKNKKDPKDSVKKASSIDLIPDSNKKETE

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=211130 LA20249_RS05130 WP_057736840.1 1061420..1062571(-) (recA) [Companilactobacillus alimentarius DSM 20249]
TTGGCTAAAGATGAACGACAAAAGGCTTTAGATGTAGCCTTAAAAAAGATTGAAAAGGATTTTGGTAAAGGTGCCATTAT
GAGAATGGGTGATGATTTAAACACTCAAATTTCAACTGTATCTACAGGTTCATTAGCCCTAGACAACGCTCTAGGTGTGG
GTGGATTTCCACGTGGAAGAATTGTTGAAATCTATGGCCCAGAAAGTTCTGGTAAAACTACTGTAGCTTTGCATGCCGTT
GCTCAGGTACAAAAGCAAGGTGGAACTGCCGCTTATATTGATGCCGAGAATGCGATGGATCCAGAGTATGCCAAAGCATT
AGGTGTTAATATTGATGATTTATTGCTATCCCAACCTGATACAGGTGAACAAGGTTTAGAGATTGCTGATGCGTTAGTGA
CTAGTGGTGCTGTGGATATTGTTGTTGTTGATTCAGTTGCCGCTTTAGTTCCACGTGCCGAAATTGAAGGCGAAATGGGT
GATGCTCATGTTGGTCTACAAGCTAGATTGATGTCACAAGCATTGCGTAAATTATCTGGTACTATCAATAAAACTAAGAC
AATTGCACTGTTTATTAATCAAATTCGTGAAAAAGTCGGTATTATGTTTGGTAATCCAGAAACAACTCCTGGTGGTCGTG
CTTTGAAATTCTACGCTACGATCAGACTTGAAGTACGCCGTGCTGAACAGATTAAAGATGGCTCAGATGTTATTGGTAAC
CGTACTAAGATTAAAGTTGTTAAAAACAAGGTGGCTCCACCATTTAAGGTTGCTTTGGTAGATATCATGTATGGTAAGGG
AATTTCTCAAACCGGTGAATTGGTTGATATGGCTGTCGAAAAAGATATCATCGACAAGAGTGGTTCATGGTATTCATATG
GAGATGAAAGAATCGGCCAAGGTCGAGAAAATGCGAAGACCTACTTGTCTGAGAATCCTGAAAAGATGGATGAGATTCGA
AAGAAAGTTCGTGAAGCTTATGGAATGGATGGAGCCAAAAAATCAGATGATGATTCAAAAGACTCTAAAGATTCCAAAGA
TTCCAAAGAAGATTCAAAAGATTCTAAAAATAAAAAAGATCCAAAAGATTCCGTGAAAAAGGCGTCAAGTATTGATTTAA
TTCCTGATTCTAATAAAAAAGAGACTGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2K9HIS0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

85.119

87.728

0.747
  recA Bacillus subtilis subsp. subtilis str. 168

75.153

85.117

0.64
  recA Streptococcus mutans UA159

67.877

93.473

0.634
  recA Streptococcus pneumoniae R6

68.946

91.645

0.632
  recA Streptococcus pneumoniae TIGR4

68.946

91.645

0.632
  recA Streptococcus pneumoniae Rx1

68.946

91.645

0.632
  recA Streptococcus pneumoniae D39

68.946

91.645

0.632
  recA Streptococcus mitis NCTC 12261

68.391

90.862

0.621
  recA Lactococcus lactis subsp. cremoris KW2

72.036

85.901

0.619
  recA Streptococcus mitis SK321

68.103

90.862

0.619
  recA Streptococcus pyogenes NZ131

71.733

85.901

0.616
  recA Neisseria gonorrhoeae MS11

64.024

85.64

0.548
  recA Neisseria gonorrhoeae MS11

64.024

85.64

0.548
  recA Neisseria gonorrhoeae strain FA1090

64.024

85.64

0.548
  recA Ralstonia pseudosolanacearum GMI1000

66.134

81.723

0.54
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.777

84.334

0.538
  recA Glaesserella parasuis strain SC1401

57.835

91.645

0.53
  recA Acinetobacter baumannii D1279779

60.059

88.251

0.53
  recA Acinetobacter baylyi ADP1

62.733

84.073

0.527
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.119

87.728

0.527
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.422

84.073

0.525
  recA Vibrio cholerae strain A1552

62.422

84.073

0.525
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.976

85.64

0.522
  recA Helicobacter pylori strain NCTC11637

60

86.162

0.517
  recA Helicobacter pylori 26695

60

86.162

0.517
  recA Pseudomonas stutzeri DSM 10701

61.682

83.812

0.517

Multiple sequence alignment