Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   BUQ72_RS12355 Genome accession   NZ_CP018845
Coordinates   2792746..2793795 (-) Length   349 a.a.
NCBI ID   WP_079216761.1    Uniprot ID   A0A246WTE8
Organism   Herbaspirillum robiniae strain AA6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2787746..2798795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BUQ72_RS12335 - 2788392..2789117 (-) 726 WP_079216757.1 TerC family protein -
  BUQ72_RS12340 sucD 2789368..2790249 (-) 882 WP_079216758.1 succinate--CoA ligase subunit alpha -
  BUQ72_RS12345 sucC 2790349..2791515 (-) 1167 WP_079216759.1 ADP-forming succinate--CoA ligase subunit beta -
  BUQ72_RS12350 recX 2792004..2792471 (-) 468 WP_079216760.1 recombination regulator RecX -
  BUQ72_RS12355 recA 2792746..2793795 (-) 1050 WP_079216761.1 recombinase RecA Machinery gene
  BUQ72_RS12360 - 2794162..2795790 (+) 1629 WP_079216762.1 tetratricopeptide repeat protein -
  BUQ72_RS12365 - 2795793..2796401 (+) 609 WP_079216763.1 sensor histidine kinase -
  BUQ72_RS12370 - 2796546..2797532 (+) 987 WP_079216764.1 aliphatic sulfonate ABC transporter substrate-binding protein -
  BUQ72_RS12375 - 2797537..2798442 (+) 906 WP_079216765.1 ABC transporter permease -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37255.45 Da        Isoelectric Point: 5.1881

>NTDB_id=210958 BUQ72_RS12355 WP_079216761.1 2792746..2793795(-) (recA) [Herbaspirillum robiniae strain AA6]
MDDKKAANTSEKGKALAAALAQIEKQFGKGSVMRMEDGIIAEEIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT
TLTLQAIAEMQKLGGTCAFIDAEHALDVTYAQKLGVNLNDLLISQPDTGEQALEITDALVRSGAVDLIVVDSVAALTPKA
EIEGDMGDSLPGLQARLMSQALRKLTGSINRTNTTVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKS
GDEVIGSETRVKVVKNKVAPPFREAHFDILYGEGTSREGEILDLGSEHKVVEKSGAWYSYNGDKIGQGKDNARNFLKERP
ELAREIENKVRIALGVPELAGGEAKVEAS

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=210958 BUQ72_RS12355 WP_079216761.1 2792746..2793795(-) (recA) [Herbaspirillum robiniae strain AA6]
ATGGACGACAAAAAAGCTGCGAACACCTCTGAAAAGGGCAAGGCGCTGGCCGCCGCGTTGGCGCAGATTGAAAAGCAGTT
TGGCAAGGGCTCCGTGATGCGCATGGAAGACGGCATCATCGCAGAGGAGATCCAGGTCGTCTCGACCGGTTCCCTCGGCC
TGGATATCGCACTGGGCGTCGGCGGCCTGCCGCGCGGGCGCGTCGTCGAGATCTACGGCCCGGAATCGTCGGGCAAGACC
ACCCTGACGCTGCAAGCCATTGCCGAGATGCAAAAGCTGGGCGGCACTTGCGCCTTCATCGACGCCGAGCACGCGCTGGA
TGTCACCTATGCCCAGAAGCTGGGCGTGAACCTGAACGACCTGCTGATTTCGCAGCCGGATACCGGCGAACAGGCGCTTG
AAATTACCGACGCCCTGGTACGCTCCGGCGCGGTCGACCTGATCGTGGTCGACTCGGTGGCGGCGCTGACCCCCAAGGCC
GAAATCGAAGGCGACATGGGCGACTCGCTGCCCGGCCTGCAGGCCCGCCTGATGTCGCAGGCGCTGCGCAAGCTGACCGG
CAGCATCAACCGCACCAACACCACCGTCATCTTCATCAACCAGATCCGGATGAAGATCGGCGTCATGTTCGGCAACCCGG
AAACCACCACCGGCGGCAACGCGCTGAAGTTCTACGCCTCCGTGCGCCTGGACATCCGCCGCACCGGCTCGATCAAGTCC
GGCGACGAAGTCATCGGCAGCGAAACCCGCGTCAAGGTCGTCAAGAACAAGGTCGCCCCGCCGTTCCGCGAAGCGCACTT
CGACATCCTGTATGGAGAAGGCACCTCGCGCGAAGGCGAGATCCTGGACCTGGGTTCGGAGCACAAGGTGGTCGAGAAGT
CCGGCGCCTGGTACAGCTACAACGGCGACAAGATCGGCCAGGGCAAGGACAATGCGCGCAACTTCCTGAAGGAGCGCCCG
GAGCTGGCGCGCGAGATCGAGAACAAGGTCCGCATCGCGCTGGGCGTGCCTGAACTGGCCGGCGGCGAAGCCAAGGTCGA
AGCTTCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(14-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A246WTE8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

84.226

96.275

0.811
  recA Pseudomonas stutzeri DSM 10701

74.613

92.55

0.691
  recA Neisseria gonorrhoeae MS11

73.171

93.983

0.688
  recA Neisseria gonorrhoeae MS11

73.171

93.983

0.688
  recA Neisseria gonorrhoeae strain FA1090

73.171

93.983

0.688
  recA Vibrio cholerae strain A1552

73.394

93.696

0.688
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.394

93.696

0.688
  recA Glaesserella parasuis strain SC1401

72.205

94.842

0.685
  recA Acinetobacter baylyi ADP1

71.299

94.842

0.676
  recA Acinetobacter baumannii D1279779

71.875

91.691

0.659
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

67.485

93.41

0.63
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.14

98.281

0.63
  recA Bacillus subtilis subsp. subtilis str. 168

65.443

93.696

0.613
  recA Helicobacter pylori 26695

64.742

94.269

0.61
  recA Helicobacter pylori strain NCTC11637

64.438

94.269

0.607
  recA Streptococcus mutans UA159

62.353

97.421

0.607
  recA Streptococcus pyogenes NZ131

63.333

94.556

0.599
  recA Streptococcus pneumoniae D39

62.651

95.129

0.596
  recA Streptococcus pneumoniae TIGR4

62.651

95.129

0.596
  recA Streptococcus pneumoniae R6

62.651

95.129

0.596
  recA Streptococcus pneumoniae Rx1

62.651

95.129

0.596
  recA Lactococcus lactis subsp. cremoris KW2

60.882

97.421

0.593
  recA Streptococcus mitis SK321

62.349

95.129

0.593
  recA Streptococcus mitis NCTC 12261

62.349

95.129

0.593
  recA Latilactobacillus sakei subsp. sakei 23K

62.614

94.269

0.59
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.697

94.556

0.564

Multiple sequence alignment