Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CVIC8964_RS00080 Genome accession   NZ_CP018791
Coordinates   20395..21432 (-) Length   345 a.a.
NCBI ID   WP_086247427.1    Uniprot ID   -
Organism   Campylobacter vicugnae strain RM8964     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 15395..26432
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVIC8964_RS00050 (CVIC8964_0009) - 15525..16589 (-) 1065 WP_086333239.1 ATP-binding protein -
  CVIC8964_RS00055 (CVIC8964_0010) - 16586..17155 (-) 570 WP_086249408.1 ribonuclease HII -
  CVIC8964_RS00060 (CVIC8964_0011) - 17148..18119 (-) 972 WP_086247431.1 DUF475 domain-containing protein -
  CVIC8964_RS00065 (CVIC8964_0012) - 18162..18872 (-) 711 WP_086333240.1 AMIN domain-containing protein -
  CVIC8964_RS00070 (CVIC8964_0013) - 18879..19148 (-) 270 WP_086247429.1 hypothetical protein -
  CVIC8964_RS00075 (CVIC8964_0014) eno 19145..20395 (-) 1251 WP_086333241.1 phosphopyruvate hydratase -
  CVIC8964_RS00080 (CVIC8964_0015) recA 20395..21432 (-) 1038 WP_086247427.1 recombinase RecA Machinery gene
  CVIC8964_RS00085 (CVIC8964_0016) - 21673..23250 (-) 1578 WP_086333242.1 flagellin B -
  CVIC8964_RS00090 (CVIC8964_0017) - 23717..24643 (-) 927 WP_236861177.1 methionyl-tRNA formyltransferase -
  CVIC8964_RS00095 (CVIC8964_0018) nfo 24663..25505 (-) 843 WP_086333243.1 deoxyribonuclease IV -
  CVIC8964_RS00100 (CVIC8964_0019) - 25502..25999 (-) 498 WP_086333244.1 hypothetical protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37258.47 Da        Isoelectric Point: 4.8259

>NTDB_id=210236 CVIC8964_RS00080 WP_086247427.1 20395..21432(-) (recA) [Campylobacter vicugnae strain RM8964]
MDENKKKSLDLALKQIDKAFGKGTVLRLGDKEIESIDAISTGSIGLDIALGIGGVPKGRIIEIYGPESSGKTTLTLHLIA
ECQKNGGVCAFVDAEHALDVKYAKNLGIDTDNLYISQPDFGEQALDIVETLARSGAVDLIIVDSVAALTPKSEIEGDMGD
QHVGLQARLMSQALRKLTGIVHKMGTTVVFINQIRMKIGAMGYGTPETTTGGNALKFYASVRLDVRKVATLKQSDEPIGN
RVKVKVVKNKVAPPFKVAEFDIMFGEGISKEGEIVDYGVKLDIIDKSGAWFSYESTKLGQGRENAKAFLKENLNVADEIT
NKIRENMGDSIMSSGSDDENESEEE

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=210236 CVIC8964_RS00080 WP_086247427.1 20395..21432(-) (recA) [Campylobacter vicugnae strain RM8964]
ATGGACGAAAATAAGAAAAAAAGCCTTGATTTAGCTCTTAAGCAGATAGATAAAGCTTTTGGTAAAGGTACTGTGCTTAG
ACTAGGAGATAAAGAGATAGAGTCTATAGATGCAATTAGTACTGGCTCAATCGGTCTTGATATTGCTCTTGGTATCGGCG
GAGTGCCAAAAGGTAGAATTATAGAGATTTATGGCCCTGAAAGTAGTGGTAAAACTACTCTTACTCTTCATCTAATCGCC
GAATGTCAAAAAAATGGCGGAGTTTGTGCCTTTGTCGATGCAGAACACGCACTAGATGTCAAATATGCTAAAAATCTAGG
TATAGATACTGATAATCTCTACATATCTCAGCCAGATTTTGGTGAGCAAGCTCTTGATATTGTAGAGACTCTAGCTAGAA
GTGGCGCAGTAGATTTAATCATAGTAGATAGCGTCGCAGCTCTTACGCCAAAAAGCGAGATAGAAGGCGATATGGGTGAT
CAACATGTAGGCTTACAAGCAAGACTAATGAGTCAAGCCCTAAGAAAACTAACTGGTATCGTCCATAAAATGGGAACTAC
GGTTGTTTTTATCAACCAAATTCGTATGAAAATCGGTGCTATGGGATATGGCACACCAGAGACTACTACGGGTGGTAATG
CACTTAAATTTTACGCTTCAGTCCGTTTAGATGTACGCAAAGTAGCTACTCTAAAACAAAGCGATGAGCCAATTGGCAAT
AGAGTTAAAGTCAAAGTAGTAAAAAATAAGGTAGCTCCACCATTTAAAGTAGCTGAATTTGATATAATGTTTGGCGAGGG
AATTAGCAAAGAAGGTGAAATCGTAGATTATGGTGTAAAACTAGATATAATCGATAAAAGTGGTGCGTGGTTTAGCTATG
AAAGCACCAAACTAGGTCAAGGTAGAGAAAATGCTAAGGCCTTTTTAAAAGAAAATTTAAATGTTGCTGATGAGATAACA
AATAAAATTCGCGAAAATATGGGCGATAGTATTATGAGTAGCGGAAGCGATGATGAAAATGAAAGCGAGGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

83.721

99.71

0.835
  recA Helicobacter pylori strain NCTC11637

77.273

95.652

0.739
  recA Helicobacter pylori 26695

77.439

95.072

0.736
  recA Glaesserella parasuis strain SC1401

62.931

100

0.635
  recA Neisseria gonorrhoeae MS11

62.899

100

0.629
  recA Neisseria gonorrhoeae MS11

62.899

100

0.629
  recA Neisseria gonorrhoeae strain FA1090

62.899

100

0.629
  recA Acinetobacter baylyi ADP1

61.782

100

0.623
  recA Acinetobacter baumannii D1279779

62.319

100

0.623
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.253

96.232

0.609
  recA Pseudomonas stutzeri DSM 10701

63.914

94.783

0.606
  recA Bacillus subtilis subsp. subtilis str. 168

64

94.203

0.603
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.154

94.203

0.586
  recA Vibrio cholerae strain A1552

62.154

94.203

0.586
  recA Ralstonia pseudosolanacearum GMI1000

63.323

92.464

0.586
  recA Streptococcus mutans UA159

56.41

100

0.574
  recA Streptococcus pyogenes NZ131

59.697

95.652

0.571
  recA Streptococcus pneumoniae Rx1

56.936

100

0.571
  recA Streptococcus pneumoniae D39

56.936

100

0.571
  recA Streptococcus pneumoniae R6

56.936

100

0.571
  recA Streptococcus pneumoniae TIGR4

56.936

100

0.571
  recA Latilactobacillus sakei subsp. sakei 23K

59.146

95.072

0.562
  recA Lactococcus lactis subsp. cremoris KW2

58.841

95.072

0.559
  recA Streptococcus mitis NCTC 12261

58.537

95.072

0.557
  recA Streptococcus mitis SK321

58.537

95.072

0.557
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.901

93.333

0.522

Multiple sequence alignment