Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CIGN_RS00075 Genome accession   NZ_CP018788
Coordinates   12592..13626 (-) Length   344 a.a.
NCBI ID   WP_086225985.1    Uniprot ID   -
Organism   Campylobacter devanensis strain NCTC 13003     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7592..18626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CIGN_RS00045 (CIGN_0008) - 8300..8869 (-) 570 WP_086233602.1 ribonuclease HII -
  CIGN_RS00050 (CIGN_0009) - 8862..9833 (-) 972 WP_086301884.1 DUF475 domain-containing protein -
  CIGN_RS00055 (CIGN_0010) - 9830..10261 (-) 432 WP_086301885.1 nuclease-related domain-containing protein -
  CIGN_RS00060 (CIGN_0011) - 10358..11068 (-) 711 WP_086225235.1 AMIN domain-containing protein -
  CIGN_RS00065 (CIGN_0012) - 11076..11345 (-) 270 WP_086225234.1 hypothetical protein -
  CIGN_RS00070 (CIGN_0013) eno 11342..12592 (-) 1251 WP_086301886.1 phosphopyruvate hydratase -
  CIGN_RS00075 (CIGN_0014) recA 12592..13626 (-) 1035 WP_086225985.1 recombinase RecA Machinery gene
  CIGN_RS00080 (CIGN_0015) - 13817..14881 (-) 1065 WP_086303177.1 glycosyltransferase family 4 protein -
  CIGN_RS00085 (CIGN_0016) - 14878..16416 (-) 1539 WP_086301887.1 glycosyltransferase -
  CIGN_RS00090 (CIGN_0017) coaE 16425..17039 (-) 615 WP_086301888.1 dephospho-CoA kinase -
  CIGN_RS00095 (CIGN_0018) - 17032..17394 (-) 363 WP_086225229.1 RidA family protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 37236.51 Da        Isoelectric Point: 4.8294

>NTDB_id=210214 CIGN_RS00075 WP_086225985.1 12592..13626(-) (recA) [Campylobacter devanensis strain NCTC 13003]
MDENKKKSLDLALKQIDKAFGKGTVLRLGDKEIEPIDAIGTGSIGLDIALGIGGIPRGRIIEIYGPESSGKTTLTLHLIA
ECQKNGGVCAFVDAEHALDVKYAKNLGIDTDNLYISQPDFGEQALDIVETLARSGAVDLIIVDSVAALTPKSEIEGDMGD
QHVGLQARLMSQALRKLTGVVHKMGTTVVFINQIRMKIGAMGYGTPETTTGGNALKFYASVRLDVRKVATLKQSEEPIGN
RVKVKVVKNKVAPPFRVTEFDIMFGEGISKEGEIIDYGVKLDIIDKSGAWFSYESTKLGQGRENAKAFLKENLNIADEIT
AKIRENIGDSMMSSGDDENESEEE

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=210214 CIGN_RS00075 WP_086225985.1 12592..13626(-) (recA) [Campylobacter devanensis strain NCTC 13003]
ATGGACGAAAATAAGAAAAAAAGCCTTGATTTAGCCCTTAAACAGATTGATAAAGCCTTTGGTAAAGGTACTGTTCTTAG
GCTTGGCGATAAGGAAATTGAGCCAATTGATGCTATTGGAACTGGATCAATCGGACTTGATATTGCACTTGGCATAGGTG
GTATTCCTCGTGGTAGAATCATCGAAATTTACGGTCCTGAAAGTAGCGGTAAGACAACTCTGACTCTTCATCTAATTGCT
GAATGTCAAAAAAATGGTGGAGTTTGTGCCTTTGTCGATGCAGAACACGCATTAGATGTTAAATATGCTAAAAATCTAGG
CATAGATACTGATAATCTTTACATCTCTCAGCCAGATTTTGGTGAACAAGCGCTTGATATTGTTGAGACTCTAGCTAGAA
GTGGTGCAGTAGATCTAATCATAGTAGATAGTGTCGCAGCTCTAACACCAAAAAGCGAAATAGAAGGCGATATGGGAGAC
CAGCATGTAGGACTTCAAGCAAGACTAATGAGTCAAGCCCTAAGAAAACTTACTGGTGTCGTCCATAAAATGGGAACCAC
AGTTGTCTTTATCAACCAAATTCGTATGAAAATCGGCGCTATGGGATATGGTACTCCAGAGACTACAACAGGTGGTAATG
CACTTAAATTCTACGCTTCAGTCCGCTTAGATGTAAGAAAAGTCGCCACATTAAAACAAAGTGAAGAGCCAATTGGAAAT
AGAGTTAAGGTTAAAGTGGTTAAAAATAAGGTTGCTCCACCATTTAGAGTGACTGAATTTGATATAATGTTTGGCGAAGG
AATTAGTAAAGAAGGTGAAATTATAGATTATGGTGTAAAACTTGATATAATCGATAAAAGCGGCGCCTGGTTTAGCTATG
AAAGCACAAAACTAGGTCAAGGTAGAGAGAATGCAAAAGCGTTTTTAAAAGAGAATTTAAATATAGCTGATGAGATAACA
GCTAAAATCCGTGAAAATATAGGTGATAGCATGATGAGTAGCGGTGATGATGAGAATGAAAGTGAGGAAGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

83.382

99.709

0.831
  recA Helicobacter pylori strain NCTC11637

77.576

95.93

0.744
  recA Helicobacter pylori 26695

77.273

95.93

0.741
  recA Neisseria gonorrhoeae MS11

63.768

100

0.64
  recA Neisseria gonorrhoeae MS11

63.768

100

0.64
  recA Neisseria gonorrhoeae strain FA1090

63.768

100

0.64
  recA Glaesserella parasuis strain SC1401

62.356

100

0.631
  recA Bacillus subtilis subsp. subtilis str. 168

64.923

94.477

0.613
  recA Acinetobacter baylyi ADP1

61.337

100

0.613
  recA Pseudomonas stutzeri DSM 10701

63.609

95.058

0.605
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.651

96.512

0.605
  recA Acinetobacter baumannii D1279779

63.303

95.058

0.602
  recA Ralstonia pseudosolanacearum GMI1000

62.31

95.64

0.596
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.154

94.477

0.587
  recA Vibrio cholerae strain A1552

62.154

94.477

0.587
  recA Streptococcus pneumoniae D39

56.069

100

0.564
  recA Streptococcus pneumoniae TIGR4

56.069

100

0.564
  recA Streptococcus pneumoniae Rx1

56.069

100

0.564
  recA Streptococcus pneumoniae R6

56.069

100

0.564
  recA Streptococcus pyogenes NZ131

57.879

95.93

0.555
  recA Latilactobacillus sakei subsp. sakei 23K

57.927

95.349

0.552
  recA Streptococcus mutans UA159

56.97

95.93

0.547
  recA Streptococcus mitis NCTC 12261

57.317

95.349

0.547
  recA Lactococcus lactis subsp. cremoris KW2

57.716

94.186

0.544
  recA Streptococcus mitis SK321

56.707

95.349

0.541
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.908

94.767

0.52

Multiple sequence alignment