Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AYT26_RS12035 Genome accession   NC_002570
Coordinates   2503142..2504191 (-) Length   349 a.a.
NCBI ID   WP_010898536.1    Uniprot ID   -
Organism   Halalkalibacterium halodurans C-125     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2496604..2504191 2503142..2504191 within 0


Gene organization within MGE regions


Location: 2496604..2504191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AYT26_RS12005 (BH2377) - 2496604..2497818 (-) 1215 WP_010897126.1 ISL3-like element IS652 family transposase -
  AYT26_RS12010 (BH2378) rny 2497968..2499533 (-) 1566 WP_010898531.1 ribonuclease Y -
  AYT26_RS12015 (BH2379) - 2499681..2500346 (-) 666 WP_010898532.1 ATPase -
  AYT26_RS12020 (BH2380) - 2500339..2500689 (-) 351 WP_407901189.1 hypothetical protein -
  AYT26_RS12025 (BH_RS20590) - 2500622..2502034 (-) 1413 WP_010898534.1 AAA family ATPase -
  AYT26_RS12030 (BH2382) - 2502021..2503019 (-) 999 WP_010898535.1 metallophosphoesterase family protein -
  AYT26_RS12035 (BH2383) recA 2503142..2504191 (-) 1050 WP_010898536.1 recombinase RecA Machinery gene

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37914.11 Da        Isoelectric Point: 4.8681

>NTDB_id=20707 AYT26_RS12035 WP_010898536.1 2503142..2504191(-) (recA) [Halalkalibacterium halodurans C-125]
MSDRKAALDMALRQIEKQFGKGSIMKLGEQAEQRVSTISSGALALDIALGVGGYPRGRVIEVYGPESSGKTTVALHAIAE
VQRNGGQAAFIDAEHALDPVYAKKLGVNIDELLLSQPDTGEQALEIAEALVRSGAIDVIVIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGNDMVGNKT
KIKVVKNKVAPPFKQAEVDIMYGEGISREGSILDIASELDIVQKSGAWYSFNDERLGQGRENAKQFLKENPEAAEEIESR
IREHYGLNGEIEVEAPSEEEFEDLPLDLK

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=20707 AYT26_RS12035 WP_010898536.1 2503142..2504191(-) (recA) [Halalkalibacterium halodurans C-125]
ATGAGTGATCGTAAAGCAGCGTTGGACATGGCGTTACGACAAATTGAAAAGCAATTCGGAAAAGGCTCGATCATGAAGCT
GGGAGAACAAGCAGAACAACGTGTATCTACCATTTCCAGCGGTGCTCTTGCCCTTGACATCGCCCTTGGTGTTGGCGGAT
ACCCTCGTGGAAGAGTTATTGAAGTGTATGGTCCAGAATCATCTGGTAAAACGACCGTTGCCCTCCATGCGATTGCAGAG
GTGCAAAGAAATGGTGGTCAAGCTGCGTTTATTGATGCGGAACATGCCCTTGATCCGGTTTATGCGAAAAAGCTAGGTGT
AAACATTGATGAGCTTTTATTGTCACAGCCTGATACCGGAGAACAAGCGTTGGAAATCGCTGAAGCGTTAGTTCGCAGCG
GGGCCATTGACGTCATTGTCATCGACAGTGTGGCAGCTCTTGTACCGAAAGCGGAAATAGAAGGGGAGATGGGTGACAGC
CATGTTGGCTTGCAAGCACGCCTAATGTCTCAAGCGCTTCGGAAGCTTTCAGGTGCGATCAATAAGTCAAAAACAATTGC
GATTTTCATTAACCAAATTCGTGAAAAAGTTGGTGTTATGTTCGGAAACCCGGAAACGACACCGGGGGGAAGAGCGCTTA
AGTTCTATTCCTCTGTTCGTCTCGAAGTGCGCCGTGCAGAGACGTTAAAGCAAGGAAACGATATGGTCGGTAACAAGACG
AAAATTAAAGTCGTGAAAAACAAAGTGGCTCCTCCGTTTAAACAAGCGGAAGTGGATATTATGTACGGTGAAGGGATTTC
CCGTGAAGGCTCGATTTTAGATATTGCTTCTGAGCTTGATATTGTGCAAAAAAGCGGAGCTTGGTATTCCTTCAATGACG
AGCGTCTCGGTCAAGGGCGCGAGAATGCGAAACAATTTTTAAAGGAAAACCCTGAAGCTGCGGAGGAAATTGAAAGCCGA
ATTCGCGAGCATTACGGTTTGAACGGAGAGATTGAGGTGGAGGCTCCATCGGAAGAGGAGTTTGAAGATCTCCCACTCGA
TTTGAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

85.671

93.983

0.805
  recA Latilactobacillus sakei subsp. sakei 23K

70.893

99.427

0.705
  recA Streptococcus pneumoniae D39

66.575

100

0.691
  recA Streptococcus pneumoniae Rx1

66.575

100

0.691
  recA Streptococcus pneumoniae R6

66.575

100

0.691
  recA Streptococcus pneumoniae TIGR4

66.575

100

0.691
  recA Streptococcus pyogenes NZ131

67.989

100

0.688
  recA Streptococcus mitis NCTC 12261

68.805

98.281

0.676
  recA Streptococcus mitis SK321

68.805

98.281

0.676
  recA Streptococcus mutans UA159

70.213

94.269

0.662
  recA Lactococcus lactis subsp. cremoris KW2

67.857

96.275

0.653
  recA Neisseria gonorrhoeae strain FA1090

64.431

98.281

0.633
  recA Neisseria gonorrhoeae MS11

64.431

98.281

0.633
  recA Neisseria gonorrhoeae MS11

64.431

98.281

0.633
  recA Acinetobacter baumannii D1279779

61.782

99.713

0.616
  recA Ralstonia pseudosolanacearum GMI1000

67.516

89.971

0.607
  recA Glaesserella parasuis strain SC1401

60.114

100

0.605
  recA Helicobacter pylori 26695

61.516

98.281

0.605
  recA Helicobacter pylori strain NCTC11637

61.516

98.281

0.605
  recA Vibrio cholerae strain A1552

65.732

91.977

0.605
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.732

91.977

0.605
  recA Acinetobacter baylyi ADP1

60.933

98.281

0.599
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.333

94.556

0.599
  recA Pseudomonas stutzeri DSM 10701

60.704

97.708

0.593
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.691

93.696

0.587
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.187

91.691

0.57

Multiple sequence alignment