Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   BMW26_RS07200 Genome accession   NZ_CP018151
Coordinates   1546184..1547227 (+) Length   347 a.a.
NCBI ID   WP_053095836.1    Uniprot ID   A0AAC9P5B0
Organism   Microbacterium sp. 1.5R     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1541184..1552227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BMW26_RS07175 (BMW26_07175) - 1541408..1544146 (+) 2739 WP_056278509.1 DNA translocase FtsK -
  BMW26_RS07180 (BMW26_07180) pgsA 1544146..1544721 (+) 576 WP_072591151.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  BMW26_RS07185 (BMW26_07185) - 1544718..1545200 (+) 483 WP_072591152.1 CinA family protein -
  BMW26_RS07190 (BMW26_07190) - 1545342..1545650 (+) 309 WP_042541772.1 helix-turn-helix transcriptional regulator -
  BMW26_RS07195 (BMW26_07195) - 1545674..1545898 (+) 225 WP_072591153.1 DUF3046 domain-containing protein -
  BMW26_RS07200 (BMW26_07200) recA 1546184..1547227 (+) 1044 WP_053095836.1 recombinase RecA Machinery gene
  BMW26_RS07205 (BMW26_07205) - 1547534..1548109 (+) 576 WP_232224547.1 regulatory protein RecX -
  BMW26_RS07210 (BMW26_07210) miaB 1548197..1549744 (+) 1548 WP_072591155.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  BMW26_RS07215 (BMW26_07215) miaA 1549777..1550715 (+) 939 WP_072592265.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  BMW26_RS07220 (BMW26_07220) - 1550774..1551301 (+) 528 WP_056278524.1 dihydrofolate reductase family protein -
  BMW26_RS07225 (BMW26_07225) - 1551294..1551770 (+) 477 WP_072591156.1 GNAT family acetyltransferase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 36976.24 Da        Isoelectric Point: 5.5113

>NTDB_id=206485 BMW26_RS07200 WP_053095836.1 1546184..1547227(+) (recA) [Microbacterium sp. 1.5R]
MPSPADREKSLETALAQIDRQFGKGSVMRLGSDERAPVAVIPTGSIALDVALGVGGLPRGRIVEIYGPESSGKTTLTLHA
IANAQRAGGIAAFIDAEHALDPDYAAKLGVDIDALLVSQPDTGEQALEIADMLVRSGAIDLIVIDSVAALVPRAEIEGEM
GDSHVGLQARLMSQALRKLTGGLNQTNTTMIFINQLREKIGVFFGSPETTAGGKALKFYASVRMDIRRIETLKDGTDAVG
NRTRVKVVKNKMAPPFKQAEFDILYGVGISREGSLIDFGVEHGIVKKSGSWYTYDGDQLGQGKENARTFLLKNPDIALAI
ETQIKQKLGIGGATEAPADELAERRPA

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=206485 BMW26_RS07200 WP_053095836.1 1546184..1547227(+) (recA) [Microbacterium sp. 1.5R]
ATGCCATCACCCGCTGACCGCGAGAAGTCCCTCGAGACCGCCCTCGCCCAGATCGATCGTCAGTTCGGAAAGGGCTCGGT
CATGAGACTGGGCAGCGACGAGCGTGCGCCTGTCGCCGTCATTCCGACCGGTTCCATCGCTCTCGATGTCGCCCTCGGCG
TCGGAGGACTGCCGCGTGGGCGAATCGTCGAGATCTACGGTCCTGAGTCGTCGGGTAAGACGACGCTCACCCTCCACGCG
ATCGCCAACGCTCAGCGCGCCGGCGGAATCGCTGCCTTCATCGACGCCGAGCACGCGCTCGACCCTGACTACGCCGCGAA
GCTCGGTGTCGACATCGACGCCCTTCTCGTCTCGCAGCCCGACACGGGTGAGCAGGCGCTCGAGATCGCGGACATGCTCG
TCCGCTCCGGGGCGATCGACCTGATCGTCATCGACTCCGTGGCCGCGCTCGTGCCTCGAGCCGAGATCGAGGGCGAGATG
GGTGACTCCCACGTGGGTCTGCAGGCTCGTCTGATGTCTCAGGCGCTGCGAAAGCTCACCGGTGGGCTCAACCAGACGAA
CACCACGATGATCTTCATCAACCAGCTGCGAGAGAAGATCGGTGTCTTCTTCGGCTCGCCGGAGACCACCGCGGGTGGAA
AGGCGCTGAAGTTCTACGCGTCCGTCCGAATGGACATCCGCCGAATCGAGACTCTGAAGGACGGCACCGACGCAGTCGGA
AACCGTACGAGGGTCAAGGTCGTGAAGAACAAGATGGCTCCGCCGTTCAAGCAGGCTGAGTTCGACATCCTCTACGGCGT
CGGCATCTCCCGTGAGGGCAGCCTGATCGACTTCGGTGTGGAGCACGGCATCGTCAAGAAGTCCGGGTCCTGGTACACCT
ATGACGGTGACCAGCTGGGACAGGGCAAGGAGAACGCGCGAACGTTCCTGCTGAAGAACCCCGACATCGCGCTGGCGATC
GAGACCCAGATCAAGCAGAAGCTCGGCATCGGAGGAGCCACCGAGGCACCTGCTGACGAGCTCGCCGAGCGCCGCCCGGC
ATGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae strain FA1090

64.14

98.847

0.634
  recA Neisseria gonorrhoeae MS11

64.14

98.847

0.634
  recA Neisseria gonorrhoeae MS11

64.14

98.847

0.634
  recA Pseudomonas stutzeri DSM 10701

68.111

93.084

0.634
  recA Acinetobacter baylyi ADP1

64.223

98.271

0.631
  recA Acinetobacter baumannii D1279779

64.793

97.406

0.631
  recA Bacillus subtilis subsp. subtilis str. 168

66.258

93.948

0.622
  recA Ralstonia pseudosolanacearum GMI1000

68.69

90.202

0.62
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.254

93.084

0.617
  recA Vibrio cholerae strain A1552

66.254

93.084

0.617
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.947

97.695

0.605
  recA Streptococcus mitis SK321

60.405

99.712

0.602
  recA Latilactobacillus sakei subsp. sakei 23K

61.607

96.83

0.597
  recA Glaesserella parasuis strain SC1401

63.077

93.66

0.591
  recA Streptococcus mitis NCTC 12261

61.515

95.101

0.585
  recA Helicobacter pylori strain NCTC11637

61.212

95.101

0.582
  recA Helicobacter pylori 26695

61.212

95.101

0.582
  recA Streptococcus pneumoniae Rx1

61.212

95.101

0.582
  recA Streptococcus pneumoniae D39

61.212

95.101

0.582
  recA Streptococcus pneumoniae R6

61.212

95.101

0.582
  recA Streptococcus pneumoniae TIGR4

61.212

95.101

0.582
  recA Streptococcus mutans UA159

60.79

94.813

0.576
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.79

94.813

0.576
  recA Lactococcus lactis subsp. cremoris KW2

60.303

95.101

0.573
  recA Streptococcus pyogenes NZ131

60.061

94.524

0.568
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.688

92.219

0.55

Multiple sequence alignment