Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   BOP93_RS05935 Genome accession   NZ_CP018049
Coordinates   1341707..1342765 (+) Length   352 a.a.
NCBI ID   WP_005785454.1    Uniprot ID   A0A0R3ALL9
Organism   Pseudomonas orientalis strain F9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1326457..1342765 1341707..1342765 within 0


Gene organization within MGE regions


Location: 1326457..1342765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BOP93_RS05830 (BOP93_05630) - 1326457..1326945 (-) 489 WP_104501876.1 type II toxin-antitoxin system antitoxin SocA domain-containing protein -
  BOP93_RS05835 (BOP93_05635) - 1327201..1327944 (+) 744 WP_170827578.1 XRE family transcriptional regulator -
  BOP93_RS05840 (BOP93_05640) - 1328537..1328875 (+) 339 WP_065886012.1 phage holin family protein -
  BOP93_RS05845 (BOP93_05645) - 1328895..1329410 (+) 516 WP_104501877.1 hypothetical protein -
  BOP93_RS05850 (BOP93_05650) - 1329414..1330022 (+) 609 WP_104501878.1 phage baseplate assembly protein V -
  BOP93_RS05855 (BOP93_05655) - 1330035..1330367 (+) 333 WP_104501879.1 phage baseplate protein -
  BOP93_RS05860 (BOP93_05660) - 1330364..1331359 (+) 996 WP_104501880.1 baseplate J/gp47 family protein -
  BOP93_RS05865 (BOP93_05665) - 1331356..1331994 (+) 639 WP_104501881.1 phage tail protein I -
  BOP93_RS05870 (BOP93_05670) - 1331991..1332533 (+) 543 WP_104501882.1 hypothetical protein -
  BOP93_RS05875 (BOP93_05675) - 1332580..1333197 (+) 618 WP_104501883.1 hypothetical protein -
  BOP93_RS05880 (BOP93_05680) - 1333198..1333455 (+) 258 WP_104501884.1 phage tail assembly chaperone -
  BOP93_RS27575 - 1333540..1333713 (+) 174 WP_003189022.1 hypothetical protein -
  BOP93_RS05885 (BOP93_05685) - 1333716..1334882 (+) 1167 WP_065886020.1 phage tail protein -
  BOP93_RS05890 (BOP93_05690) - 1334882..1335388 (+) 507 WP_104501885.1 phage major tail tube protein -
  BOP93_RS05895 (BOP93_05695) - 1335442..1336023 (+) 582 WP_065891923.1 phage tail assembly protein -
  BOP93_RS27970 - 1336020..1336145 (+) 126 WP_256095160.1 hypothetical protein -
  BOP93_RS05900 (BOP93_05700) - 1336152..1338374 (+) 2223 WP_104501886.1 phage tail tape measure protein -
  BOP93_RS05905 (BOP93_05705) - 1338374..1338757 (+) 384 WP_065891925.1 phage tail protein -
  BOP93_RS05910 (BOP93_05710) - 1338750..1338962 (+) 213 WP_065886025.1 tail protein X -
  BOP93_RS05915 (BOP93_05715) - 1338972..1339973 (+) 1002 WP_104501887.1 contractile injection system protein, VgrG/Pvc8 family -
  BOP93_RS05920 (BOP93_05720) - 1339996..1340553 (+) 558 WP_104501888.1 glycoside hydrolase family 19 protein -
  BOP93_RS05925 (BOP93_05725) - 1340541..1341041 (+) 501 WP_104501889.1 lysis system i-spanin subunit Rz -
  BOP93_RS05930 (BOP93_05730) - 1341123..1341623 (+) 501 WP_104501890.1 CinA family protein -
  BOP93_RS05935 (BOP93_05735) recA 1341707..1342765 (+) 1059 WP_005785454.1 recombinase RecA Machinery gene

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37624.19 Da        Isoelectric Point: 5.2997

>NTDB_id=205351 BOP93_RS05935 WP_005785454.1 1341707..1342765(+) (recA) [Pseudomonas orientalis strain F9]
MDDNKKKALAAALGQIERQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVAPPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGSKIGQGKANSAKFLADNPDIAATLEK
QIRDKLLTPAPDVKAAANREPVDEMEEADTDI

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=205351 BOP93_RS05935 WP_005785454.1 1341707..1342765(+) (recA) [Pseudomonas orientalis strain F9]
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCACGACCGTCAGGCGATCCCGGCTATTTCCACTGGCTCTCTGGGTCTGGATATCGCGCTCGGCATTGGCG
GCCTGCCAAAAGGCCGTATCGTTGAGATCTACGGTCCTGAATCTTCCGGTAAAACCACCCTGACCCTGTCGGTGATTGCC
CAGGCTCAGAAAATGGGCGCCACGTGCGCGTTCGTCGATGCTGAGCACGCCCTGGATCCTGAATATGCCGGCAAGCTGGG
TGTCAACGTTGACGACCTGCTGGTTTCTCAGCCAGACACCGGTGAGCAAGCCCTGGAAATCACTGACATGCTGGTGCGTT
CCAACGCCATCGACGTGATCGTGGTTGACTCCGTGGCAGCGCTGGTACCGAAGGCAGAAATCGAAGGCGAAATGGGCGAC
ATGCACGTGGGCCTGCAAGCCCGTCTGATGTCCCAGGCGCTGCGTAAAATCACCGGCAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGTATGAAAATCGGTGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTATGCTTCGGTCCGTCTGGATATCCGTCGTACCGGCGCGGTGAAGGAAGGTGACGAGGTTGTTGGTAGCGAA
ACCCGCGTTAAAGTCGTGAAGAACAAGGTGGCCCCGCCTTTCCGTCAGGCAGAGTTCCAGATTCTTTATGGCAAAGGCAT
CTACCTGAACGGCGAGATGATCGACCTGGGTGTGCTGCACGGTTTTGTCGAGAAATCCGGTGCCTGGTATGCCTACAACG
GCAGCAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGGCAGACAACCCGGATATCGCTGCCACGCTTGAGAAG
CAGATTCGCGACAAGCTGCTGACCCCAGCACCGGACGTCAAGGCCGCCGCCAACCGCGAGCCGGTTGACGAGATGGAAGA
AGCCGACACTGACATCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0R3ALL9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

87.5

100

0.875
  recA Acinetobacter baylyi ADP1

74.64

98.58

0.736
  recA Acinetobacter baumannii D1279779

73.178

97.443

0.713
  recA Vibrio cholerae O1 biovar El Tor strain E7946

75.076

93.466

0.702
  recA Vibrio cholerae strain A1552

75.076

93.466

0.702
  recA Glaesserella parasuis strain SC1401

69.143

99.432

0.688
  recA Ralstonia pseudosolanacearum GMI1000

68.571

99.432

0.682
  recA Neisseria gonorrhoeae MS11

72.222

92.045

0.665
  recA Neisseria gonorrhoeae MS11

72.222

92.045

0.665
  recA Neisseria gonorrhoeae strain FA1090

72.222

92.045

0.665
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.526

92.898

0.599
  recA Helicobacter pylori strain NCTC11637

59.943

100

0.599
  recA Helicobacter pylori 26695

59.375

100

0.594
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.677

94.886

0.585
  recA Bacillus subtilis subsp. subtilis str. 168

61.682

91.193

0.562
  recA Streptococcus mutans UA159

60

92.33

0.554
  recA Streptococcus pyogenes NZ131

58.232

93.182

0.543
  recA Streptococcus pneumoniae Rx1

58.589

92.614

0.543
  recA Streptococcus pneumoniae D39

58.589

92.614

0.543
  recA Streptococcus pneumoniae R6

58.589

92.614

0.543
  recA Streptococcus pneumoniae TIGR4

58.589

92.614

0.543
  recA Streptococcus mitis SK321

58.824

91.761

0.54
  recA Streptococcus mitis NCTC 12261

58.824

91.761

0.54
  recA Latilactobacillus sakei subsp. sakei 23K

58.879

91.193

0.537
  recA Lactococcus lactis subsp. cremoris KW2

57.276

91.761

0.526
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.79

92.045

0.523

Multiple sequence alignment