Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   A2U20_RS09525 Genome accession   NZ_CP018032
Coordinates   1982678..1983796 (+) Length   372 a.a.
NCBI ID   WP_021112712.1    Uniprot ID   A0A084F0G7
Organism   Glaesserella parasuis D74     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1977678..1988796
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A2U20_RS12665 - 1977787..1977999 (-) 213 WP_418251463.1 hypothetical protein -
  A2U20_RS09500 (A2U20_09340) dusA 1978591..1979562 (-) 972 WP_021117354.1 tRNA dihydrouridine(20/20a) synthase DusA -
  A2U20_RS09505 (A2U20_09345) tehB 1979677..1980540 (-) 864 WP_021112753.1 SAM-dependent methyltransferase TehB -
  A2U20_RS09510 - 1980764..1980958 (-) 195 Protein_1863 cation transporter -
  A2U20_RS09515 (A2U20_09350) - 1980991..1981962 (+) 972 WP_021116195.1 aminodeoxychorismate synthase component I -
  A2U20_RS09520 (A2U20_09355) - 1981940..1982545 (+) 606 WP_021117356.1 aminotransferase class IV family protein -
  A2U20_RS09525 (A2U20_09360) recA 1982678..1983796 (+) 1119 WP_021112712.1 recombinase RecA Machinery gene
  A2U20_RS09530 (A2U20_09365) recX 1983849..1984304 (+) 456 WP_021117357.1 recombination regulator RecX -
  A2U20_RS09535 (A2U20_09370) yqfB 1984297..1984602 (+) 306 WP_021114076.1 N(4)-acetylcytidine aminohydrolase -
  A2U20_RS09540 (A2U20_09375) - 1984610..1985140 (+) 531 WP_021112716.1 type I DNA topoisomerase -
  A2U20_RS09545 (A2U20_09380) - 1985140..1985694 (+) 555 WP_021112761.1 Sua5/YciO/YrdC/YwlC family protein -
  A2U20_RS09550 (A2U20_09385) aroE 1985698..1986516 (+) 819 WP_021117358.1 shikimate dehydrogenase -
  A2U20_RS09575 (A2U20_09410) ubiK 1987201..1987461 (+) 261 WP_021112741.1 ubiquinone biosynthesis accessory factor UbiK -

Sequence

Protein


Download         Length: 372 a.a.        Molecular weight: 40277.89 Da        Isoelectric Point: 4.7724

>NTDB_id=205191 A2U20_RS09525 WP_021112712.1 1982678..1983796(+) (recA) [Glaesserella parasuis D74]
MAENKKSSKNNTVVKQVEPEQKKQALEAALAQIEKQFGKGSIMKLGQTEQLDIESVSTGSLGLDLALGIGGLPMGRIVEI
YGPESSGKTTLTLSLIAQAQKGNKTCAFIDAEHALDPVYARNLGVNTDELLISQPDNGEQALEICDALVRSGAVDVIIVD
SVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTANIKNTNCLVVFINQIRMKIGVMFGNPETTTGGNALKFYASVRLD
IRRCGVVKDGDEIIGSETKVKVVKNKVAPPFREVQFDIMYGEGISRMNELLILAEANGFIKKSGAWFSYDGTKIGQGKNN
AVKWLKENPEIADKLEQEIRNTLASNPNSVLKATASDSNDESDVEEFSEEEL

Nucleotide


Download         Length: 1119 bp        

>NTDB_id=205191 A2U20_RS09525 WP_021112712.1 1982678..1983796(+) (recA) [Glaesserella parasuis D74]
ATGGCTGAGAATAAGAAATCTTCAAAAAACAATACCGTCGTTAAACAAGTTGAACCAGAACAGAAAAAACAAGCATTGGA
AGCGGCACTTGCTCAAATTGAAAAACAATTTGGTAAAGGCTCTATTATGAAATTGGGGCAGACTGAACAATTAGATATTG
AGTCTGTTTCAACGGGATCATTAGGACTAGACCTTGCTCTTGGTATTGGTGGCTTGCCAATGGGACGTATTGTTGAAATC
TATGGACCAGAATCATCAGGTAAAACAACCTTAACACTTTCTTTAATTGCCCAAGCTCAAAAAGGCAATAAAACCTGTGC
ATTTATTGATGCGGAACACGCATTAGATCCTGTCTATGCTCGCAATTTAGGGGTAAATACCGATGAATTACTAATTTCTC
AGCCAGATAACGGCGAACAAGCTCTTGAAATCTGTGATGCGTTAGTGCGTTCAGGGGCAGTTGATGTCATTATTGTGGAC
TCTGTCGCTGCACTCACGCCAAAAGCTGAAATTGAAGGGGATATGGGTGACTCGCATATGGGCTTACAAGCACGTTTAAT
GTCACAAGCGTTGCGTAAACTTACTGCGAACATCAAAAATACCAACTGTTTAGTTGTATTTATCAACCAAATCCGTATGA
AAATTGGTGTAATGTTTGGTAATCCAGAAACCACCACAGGCGGTAATGCACTGAAATTCTATGCCTCTGTTCGTTTAGAT
ATTCGTCGTTGTGGTGTAGTCAAAGATGGCGATGAAATTATTGGTAGTGAAACAAAAGTAAAAGTAGTAAAAAATAAAGT
TGCACCGCCATTCCGTGAAGTACAATTTGATATTATGTACGGCGAAGGGATTTCTCGTATGAATGAACTACTGATTTTAG
CTGAAGCAAATGGCTTTATTAAGAAATCAGGTGCTTGGTTCTCTTACGACGGAACGAAAATTGGACAAGGTAAAAATAAT
GCAGTGAAATGGTTAAAAGAGAACCCTGAAATTGCAGATAAACTTGAACAAGAGATCCGAAATACATTGGCGTCAAACCC
AAATAGCGTATTAAAAGCGACGGCAAGCGACAGCAACGATGAAAGCGATGTCGAAGAGTTTAGCGAAGAAGAACTATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(24-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A084F0G7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Glaesserella parasuis strain SC1401

100

100

1
  recA Vibrio cholerae strain A1552

69.516

94.355

0.656
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.516

94.355

0.656
  recA Pseudomonas stutzeri DSM 10701

71.345

91.935

0.656
  recA Acinetobacter baylyi ADP1

69.298

91.935

0.637
  recA Neisseria gonorrhoeae MS11

67.521

94.355

0.637
  recA Neisseria gonorrhoeae MS11

67.521

94.355

0.637
  recA Neisseria gonorrhoeae strain FA1090

67.521

94.355

0.637
  recA Acinetobacter baumannii D1279779

71.605

87.097

0.624
  recA Ralstonia pseudosolanacearum GMI1000

70.159

84.677

0.594
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.037

93.817

0.591
  recA Streptococcus pneumoniae D39

57.641

100

0.578
  recA Streptococcus pneumoniae TIGR4

57.641

100

0.578
  recA Streptococcus pneumoniae Rx1

57.641

100

0.578
  recA Streptococcus pneumoniae R6

57.641

100

0.578
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.031

87.634

0.57
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

64

87.366

0.559
  recA Streptococcus mitis NCTC 12261

61.176

91.398

0.559
  recA Streptococcus mitis SK321

60.588

91.398

0.554
  recA Streptococcus mutans UA159

60.294

91.398

0.551
  recA Bacillus subtilis subsp. subtilis str. 168

62.121

88.71

0.551
  recA Streptococcus pyogenes NZ131

59.412

91.398

0.543
  recA Helicobacter pylori 26695

60.976

88.172

0.538
  recA Helicobacter pylori strain NCTC11637

60.671

88.172

0.535
  recA Lactococcus lactis subsp. cremoris KW2

57.558

92.473

0.532
  recA Latilactobacillus sakei subsp. sakei 23K

59.19

86.29

0.511

Multiple sequence alignment