Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   BM528_RS04220 Genome accession   NZ_CP018031
Coordinates   942168..943202 (+) Length   344 a.a.
NCBI ID   WP_071978805.1    Uniprot ID   A0AAC9JIG6
Organism   Alteromonas sp. RW2A1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 937168..948202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BM528_RS04210 (BM528_04165) mutS 938519..941122 (-) 2604 WP_071978804.1 DNA mismatch repair protein MutS -
  BM528_RS04215 (BM528_04170) - 941237..941776 (+) 540 WP_083595198.1 CinA family protein -
  BM528_RS04220 (BM528_04175) recA 942168..943202 (+) 1035 WP_071978805.1 recombinase RecA Machinery gene
  BM528_RS04225 (BM528_04180) - 943744..944550 (+) 807 WP_071978806.1 ATP-binding cassette domain-containing protein -
  BM528_RS04230 (BM528_04185) - 944534..945742 (+) 1209 WP_071978807.1 ABC transporter permease subunit -
  BM528_RS04235 (BM528_04190) - 945854..946177 (-) 324 WP_071978808.1 EscU/YscU/HrcU family type III secretion system export apparatus switch protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 37228.55 Da        Isoelectric Point: 5.1778

>NTDB_id=205159 BM528_RS04220 WP_071978805.1 942168..943202(+) (recA) [Alteromonas sp. RW2A1]
MTDQNRSKALDAALSQIEKQFGKGSIMKLGENKTMDVETISTGSLGLDVALGAGGLPLGRIVEIYGPESSGKTTLTLEVI
AEAQRQGKTCAFVDAEHALDPIYAEKLGVNIDELLVSQPDTGEQALEICDMLTRSGAVDVIVVDSVAALTPRAEIEGDIG
DSHVGLAARMMSQSMRKITGNLKRSNTMMIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKEGDEVVGN
ETRVKVVKNKIAPPFKQAEFIIKYGEGISKHGELIDLGVKHKLIDKAGAWYSYNSDRIGQGKANSMQFLKNNPEVSNEIE
AKLRELLLPSKVAVDNSEDVNEES

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=205159 BM528_RS04220 WP_071978805.1 942168..943202(+) (recA) [Alteromonas sp. RW2A1]
ATGACAGATCAGAATAGAAGCAAAGCATTAGATGCAGCGTTATCCCAAATTGAAAAGCAATTTGGTAAAGGCTCAATTAT
GAAGTTGGGCGAGAACAAGACAATGGATGTAGAAACCATTTCTACGGGCTCGCTTGGGCTAGACGTTGCGCTTGGTGCTG
GTGGATTGCCCCTAGGCCGTATTGTTGAGATTTACGGTCCTGAGTCATCGGGTAAAACAACGCTTACACTTGAAGTTATT
GCTGAAGCTCAGCGTCAGGGCAAAACTTGTGCATTCGTTGATGCAGAACACGCACTTGACCCAATTTACGCAGAAAAGCT
TGGTGTTAATATTGATGAGCTACTGGTTTCTCAGCCAGACACCGGTGAACAAGCGCTGGAGATTTGTGACATGCTGACAC
GCTCTGGTGCTGTAGACGTTATTGTTGTCGACTCTGTAGCAGCGTTAACACCACGGGCAGAGATTGAAGGCGATATCGGT
GATTCACACGTTGGTCTTGCGGCGAGAATGATGTCGCAAAGCATGCGTAAAATTACAGGTAACTTGAAGCGCTCGAATAC
AATGATGATTTTCATCAACCAAATTCGTATGAAGATTGGTGTTATGTTCGGAAGCCCTGAAACAACGACAGGTGGTAATG
CACTTAAGTTCTATGCGTCGGTACGTTTGGATATCAGAAGAATTGGTTCTGTTAAAGAGGGCGATGAAGTTGTTGGTAAC
GAGACTCGCGTAAAAGTTGTTAAAAATAAGATTGCTCCTCCTTTCAAGCAAGCCGAGTTTATCATCAAGTACGGTGAAGG
TATTTCTAAGCATGGCGAATTGATTGATTTAGGTGTTAAGCACAAGCTCATTGATAAAGCAGGTGCTTGGTATAGCTACA
ACTCTGATCGCATTGGTCAGGGTAAAGCAAACAGCATGCAATTTTTGAAGAACAACCCTGAAGTTTCAAATGAAATTGAA
GCAAAGTTAAGAGAATTGCTTTTGCCTAGTAAGGTTGCAGTAGATAATAGTGAAGACGTAAACGAAGAGTCGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

79.141

94.767

0.75
  recA Vibrio cholerae strain A1552

79.141

94.767

0.75
  recA Acinetobacter baylyi ADP1

70.674

99.128

0.701
  recA Pseudomonas stutzeri DSM 10701

73.62

94.767

0.698
  recA Acinetobacter baumannii D1279779

71.646

95.349

0.683
  recA Neisseria gonorrhoeae MS11

71.56

95.058

0.68
  recA Neisseria gonorrhoeae MS11

71.56

95.058

0.68
  recA Neisseria gonorrhoeae strain FA1090

71.56

95.058

0.68
  recA Glaesserella parasuis strain SC1401

67.347

99.709

0.672
  recA Ralstonia pseudosolanacearum GMI1000

69.512

95.349

0.663
  recA Bacillus subtilis subsp. subtilis str. 168

64.798

93.314

0.605
  recA Streptococcus pneumoniae D39

60.526

99.419

0.602
  recA Streptococcus pneumoniae TIGR4

60.526

99.419

0.602
  recA Streptococcus pneumoniae R6

60.526

99.419

0.602
  recA Streptococcus pneumoniae Rx1

60.526

99.419

0.602
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.78

92.442

0.599
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.048

96.512

0.599
  recA Streptococcus mitis SK321

62.848

93.895

0.59
  recA Helicobacter pylori 26695

62.346

94.186

0.587
  recA Streptococcus mitis NCTC 12261

62.539

93.895

0.587
  recA Helicobacter pylori strain NCTC11637

62.037

94.186

0.584
  recA Streptococcus mutans UA159

62.229

93.895

0.584
  recA Streptococcus pyogenes NZ131

61.61

93.895

0.578
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.371

93.314

0.573
  recA Lactococcus lactis subsp. cremoris KW2

58.806

97.384

0.573
  recA Latilactobacillus sakei subsp. sakei 23K

60.802

94.186

0.573

Multiple sequence alignment