Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   BKP57_RS20675 Genome accession   NZ_CP017762
Coordinates   4574864..4575904 (+) Length   346 a.a.
NCBI ID   WP_050352809.1    Uniprot ID   A0A0L0QNN3
Organism   Virgibacillus sp. 6R     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4569864..4580904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKP57_RS20655 (BKP57_20245) - 4571083..4571874 (+) 792 WP_050352805.1 YmfK family protein -
  BKP57_RS20660 (BKP57_20250) - 4571892..4572800 (+) 909 WP_072742263.1 helix-turn-helix domain-containing protein -
  BKP57_RS20665 (BKP57_20255) pgsA 4572864..4573442 (+) 579 WP_072742264.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  BKP57_RS20670 (BKP57_20260) - 4573439..4574686 (+) 1248 WP_072742265.1 competence/damage-inducible protein A -
  BKP57_RS20675 (BKP57_20265) recA 4574864..4575904 (+) 1041 WP_050352809.1 recombinase RecA Machinery gene
  BKP57_RS20680 (BKP57_20270) - 4576343..4577323 (-) 981 Protein_4098 ketoacyl-ACP synthase III -
  BKP57_RS20685 (BKP57_20275) rny 4577980..4579542 (+) 1563 WP_050352810.1 ribonuclease Y -
  BKP57_RS20690 (BKP57_20280) - 4579631..4580425 (+) 795 WP_050352811.1 TIGR00282 family metallophosphoesterase -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37480.50 Da        Isoelectric Point: 4.7236

>NTDB_id=202635 BKP57_RS20675 WP_050352809.1 4574864..4575904(+) (recA) [Virgibacillus sp. 6R]
MSDKKQALDMALKQIEKQFGKGSIMKLGEQAEQKIATIPSGSLALDVALGIGGYPKGRVVEIYGPESSGKTTVALHAIAE
AQQQGGQAAFIDAEHALDPTYARALGVDIEELLLSQPDTGEQALEIAEALVRSGAVDIIVVDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTTAIFINQIREKVGVMFGNPEITPGGRALKFYSSVRLEVRRAESLKQGNDMVGNKA
RIKVVKNKVAPPFKQAEVDIMYGEGISKEGEILDIGSDLDIVQKSGAWYSYNEERLGQGRENAKQFLKENTDMMAEIHAA
IRQHYNLDDEPNEEEAEAFSQESLDV

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=202635 BKP57_RS20675 WP_050352809.1 4574864..4575904(+) (recA) [Virgibacillus sp. 6R]
TTGAGTGATAAAAAACAAGCTTTAGATATGGCGTTAAAACAAATAGAGAAGCAGTTTGGAAAAGGTTCCATCATGAAACT
GGGAGAACAAGCTGAACAAAAAATAGCAACTATACCTAGTGGTTCACTAGCATTAGATGTAGCACTTGGAATCGGTGGAT
ATCCAAAAGGTCGAGTTGTTGAAATATATGGTCCGGAATCGTCCGGTAAAACAACGGTAGCTTTACATGCAATTGCAGAA
GCACAGCAACAGGGTGGACAAGCGGCCTTTATTGATGCGGAGCATGCGCTTGACCCAACATATGCACGCGCTTTAGGAGT
GGACATTGAAGAACTATTACTCTCACAGCCTGATACAGGCGAACAGGCACTTGAAATCGCAGAAGCTCTTGTCCGCAGCG
GAGCAGTTGACATTATTGTAGTGGATTCTGTTGCAGCACTTGTTCCAAAAGCAGAAATTGAGGGCGAGATGGGCGATTCC
CATGTGGGGCTTCAGGCTCGTCTAATGTCCCAAGCATTGCGTAAATTATCCGGAGCTATTAATAAGTCAAAGACAACCGC
AATCTTTATTAACCAAATCCGTGAAAAAGTCGGTGTTATGTTTGGTAACCCGGAAATTACTCCCGGCGGTCGTGCACTGA
AATTCTACTCATCTGTGCGGCTTGAAGTGCGTCGTGCTGAATCATTAAAACAAGGGAATGATATGGTCGGGAACAAAGCG
AGAATTAAAGTCGTTAAAAATAAGGTTGCTCCACCATTTAAGCAAGCAGAAGTAGATATTATGTACGGGGAAGGCATATC
CAAAGAAGGCGAAATTTTGGATATTGGCTCTGATTTAGATATCGTGCAAAAAAGCGGTGCCTGGTATTCATATAATGAAG
AAAGGCTTGGTCAAGGACGTGAAAACGCGAAGCAATTTTTAAAAGAGAATACCGATATGATGGCTGAAATTCATGCGGCA
ATCAGACAGCATTATAATTTAGATGACGAGCCGAATGAAGAAGAAGCCGAAGCATTCAGTCAGGAAAGTCTGGACGTATA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(6-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0L0QNN3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

85.714

95.087

0.815
  recA Latilactobacillus sakei subsp. sakei 23K

72.59

95.954

0.697
  recA Streptococcus mitis NCTC 12261

67.622

100

0.682
  recA Streptococcus mitis SK321

68.406

99.711

0.682
  recA Streptococcus pneumoniae D39

66.572

100

0.679
  recA Streptococcus pneumoniae Rx1

66.572

100

0.679
  recA Streptococcus pneumoniae R6

66.572

100

0.679
  recA Streptococcus pneumoniae TIGR4

66.572

100

0.679
  recA Streptococcus mutans UA159

67.435

100

0.676
  recA Streptococcus pyogenes NZ131

67.147

100

0.673
  recA Lactococcus lactis subsp. cremoris KW2

66.366

96.243

0.639
  recA Helicobacter pylori 26695

63.529

98.266

0.624
  recA Neisseria gonorrhoeae strain FA1090

66.978

92.775

0.621
  recA Neisseria gonorrhoeae MS11

66.978

92.775

0.621
  recA Neisseria gonorrhoeae MS11

66.978

92.775

0.621
  recA Helicobacter pylori strain NCTC11637

63.235

98.266

0.621
  recA Ralstonia pseudosolanacearum GMI1000

62.611

97.399

0.61
  recA Glaesserella parasuis strain SC1401

59.544

100

0.604
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.609

94.509

0.601
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.609

94.509

0.601
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.863

92.775

0.592
  recA Vibrio cholerae strain A1552

63.863

92.775

0.592
  recA Pseudomonas stutzeri DSM 10701

64.062

92.486

0.592
  recA Acinetobacter baumannii D1279779

62.422

93.064

0.581
  recA Acinetobacter baylyi ADP1

62.422

93.064

0.581
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60

93.931

0.564

Multiple sequence alignment