Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   BJN34_RS03335 Genome accession   NZ_CP017757
Coordinates   704704..705771 (+) Length   355 a.a.
NCBI ID   WP_078195344.1    Uniprot ID   A0A1U9UJV9
Organism   Cupriavidus necator strain NH9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 699704..710771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJN34_RS03315 (BJN34_03280) - 699881..701581 (-) 1701 WP_078195340.1 MFS transporter -
  BJN34_RS03320 (BJN34_03285) - 701834..702157 (-) 324 WP_078195341.1 DUF4212 domain-containing protein -
  BJN34_RS03325 (BJN34_03290) - 702157..703719 (-) 1563 WP_078195342.1 sensor histidine kinase -
  BJN34_RS03330 (BJN34_03295) - 703777..704466 (-) 690 WP_078195343.1 response regulator transcription factor -
  BJN34_RS03335 (BJN34_03300) recA 704704..705771 (+) 1068 WP_078195344.1 recombinase RecA Machinery gene
  BJN34_RS03340 (BJN34_03305) recX 705853..706320 (+) 468 WP_078195345.1 recombination regulator RecX -
  BJN34_RS03345 (BJN34_03310) - 706630..707334 (+) 705 WP_078195346.1 DUF2889 domain-containing protein -
  BJN34_RS03350 (BJN34_03315) sucC 707424..708590 (+) 1167 WP_078195347.1 ADP-forming succinate--CoA ligase subunit beta -
  BJN34_RS03355 (BJN34_03320) sucD 708690..709571 (+) 882 WP_078195348.1 succinate--CoA ligase subunit alpha -
  BJN34_RS03360 (BJN34_03325) - 709817..710512 (+) 696 WP_078195349.1 TerC family protein -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 37597.09 Da        Isoelectric Point: 5.0385

>NTDB_id=202556 BJN34_RS03335 WP_078195344.1 704704..705771(+) (recA) [Cupriavidus necator strain NH9]
MDDKKAGAGVSAEKQKALAAALSQIEKQFGKGSIMRLGDGEVEKDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSG
KTTLTLQVVAEMQKLGGTCAFIDAEHALDVSYASKLGVSVGDLLISQPDTGEQALEITDALVRSGSIDLIVIDSVAALVP
KAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSI
KKGDDVIGNETKVKVVKNKVSPPFREAFFDILYGQGISRQGEIIDLGVDAKIVEKSGAWYSYNGDKIGQGKDNAREYLRE
NPDIADEIENKVRAALGVVAMNPTAAATAAVAVED

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=202556 BJN34_RS03335 WP_078195344.1 704704..705771(+) (recA) [Cupriavidus necator strain NH9]
ATGGACGACAAGAAGGCAGGTGCCGGCGTGAGCGCCGAGAAGCAAAAGGCGCTTGCCGCCGCGCTCTCCCAGATCGAGAA
GCAGTTCGGCAAGGGCTCGATCATGCGCCTGGGCGACGGCGAGGTCGAGAAGGACATCCAGGTGGTTTCCACCGGTTCGC
TCGGCCTGGATATCGCACTTGGCGTCGGTGGCCTGCCGCGCGGCCGCGTGGTCGAGATCTACGGTCCGGAATCGTCGGGC
AAGACCACGCTGACGCTGCAGGTCGTGGCCGAGATGCAGAAGCTGGGCGGCACCTGCGCCTTTATCGACGCCGAGCACGC
GCTGGACGTCAGCTACGCCTCCAAGCTGGGCGTAAGCGTCGGCGACCTGCTGATCTCGCAGCCGGACACCGGCGAGCAGG
CACTGGAAATCACCGACGCGCTGGTGCGCTCGGGCTCGATCGACCTGATCGTGATCGACTCGGTGGCGGCGCTGGTGCCC
AAGGCCGAAATCGAAGGCGAAATGGGCGATTCGCTGCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCTGCGCAAGCT
GACCGGCACCATCAAGCGCACCAACTGCCTGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCT
CGCCGGAAACCACCACCGGCGGCAATGCGCTCAAGTTCTACGCCTCGGTGCGCCTGGATATCCGCCGCATCGGCTCGATC
AAGAAGGGCGACGACGTGATCGGCAACGAGACCAAGGTCAAGGTGGTCAAGAACAAGGTATCGCCGCCGTTCCGCGAAGC
CTTCTTCGACATCCTGTACGGCCAGGGCATTTCGCGCCAGGGCGAGATCATCGATCTGGGCGTGGACGCCAAGATCGTCG
AGAAGTCGGGTGCGTGGTACAGCTACAACGGCGACAAGATCGGCCAGGGCAAGGACAACGCGCGCGAATACCTGCGCGAG
AACCCCGATATTGCCGACGAGATCGAAAACAAGGTGCGCGCTGCGCTGGGCGTGGTGGCGATGAACCCCACGGCCGCAGC
CACGGCAGCGGTAGCGGTCGAAGACTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(16-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1U9UJV9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

85.352

100

0.854
  recA Pseudomonas stutzeri DSM 10701

73.81

94.648

0.699
  recA Acinetobacter baylyi ADP1

73.574

93.803

0.69
  recA Neisseria gonorrhoeae MS11

74.468

92.676

0.69
  recA Neisseria gonorrhoeae MS11

74.468

92.676

0.69
  recA Neisseria gonorrhoeae strain FA1090

74.468

92.676

0.69
  recA Acinetobacter baumannii D1279779

70.76

96.338

0.682
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.424

92.958

0.673
  recA Vibrio cholerae strain A1552

72.424

92.958

0.673
  recA Glaesserella parasuis strain SC1401

70

95.775

0.67
  recA Helicobacter pylori 26695

65.653

92.676

0.608
  recA Helicobacter pylori strain NCTC11637

65.35

92.676

0.606
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.046

92.676

0.603
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.046

92.676

0.603
  recA Latilactobacillus sakei subsp. sakei 23K

64.724

91.831

0.594
  recA Bacillus subtilis subsp. subtilis str. 168

64.22

92.113

0.592
  recA Lactococcus lactis subsp. cremoris KW2

62.048

93.521

0.58
  recA Streptococcus mitis NCTC 12261

61.446

93.521

0.575
  recA Streptococcus mutans UA159

60.714

94.648

0.575
  recA Streptococcus pyogenes NZ131

58.671

97.465

0.572
  recA Streptococcus pneumoniae Rx1

61.145

93.521

0.572
  recA Streptococcus pneumoniae D39

61.145

93.521

0.572
  recA Streptococcus pneumoniae R6

61.145

93.521

0.572
  recA Streptococcus pneumoniae TIGR4

61.145

93.521

0.572
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.154

91.549

0.569
  recA Streptococcus mitis SK321

60.843

93.521

0.569

Multiple sequence alignment