Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   BKK81_RS05310 Genome accession   NZ_CP017751
Coordinates   1186630..1187685 (+) Length   351 a.a.
NCBI ID   WP_071011180.1    Uniprot ID   A0A1D9GWA9
Organism   Cupriavidus sp. USMAHM13 isolate pure     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1181630..1192685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKK81_RS05290 (BKK81_05290) - 1181679..1183379 (-) 1701 WP_071011173.1 MFS transporter -
  BKK81_RS05295 (BKK81_05295) - 1183654..1183956 (-) 303 WP_071011175.1 DUF4212 domain-containing protein -
  BKK81_RS05300 (BKK81_05300) - 1183959..1185536 (-) 1578 WP_071011176.1 sensor histidine kinase -
  BKK81_RS05305 (BKK81_05305) - 1185586..1186314 (-) 729 WP_071011178.1 response regulator transcription factor -
  BKK81_RS05310 (BKK81_05310) recA 1186630..1187685 (+) 1056 WP_071011180.1 recombinase RecA Machinery gene
  BKK81_RS05315 (BKK81_05315) recX 1188008..1188487 (+) 480 WP_071011182.1 recombination regulator RecX -
  BKK81_RS05320 (BKK81_05320) - 1188885..1189556 (+) 672 WP_231907977.1 DUF2889 domain-containing protein -
  BKK81_RS05325 (BKK81_05325) sucC 1189619..1190785 (+) 1167 WP_071011183.1 ADP-forming succinate--CoA ligase subunit beta -
  BKK81_RS05330 (BKK81_05330) sucD 1190880..1191761 (+) 882 WP_071011185.1 succinate--CoA ligase subunit alpha -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 37225.68 Da        Isoelectric Point: 5.0346

>NTDB_id=202514 BKK81_RS05310 WP_071011180.1 1186630..1187685(+) (recA) [Cupriavidus sp. USMAHM13 isolate pure]
MDDKKAGAGVSAEKQKALAAALSQIEKQFGKGSIMRLGDGDVEQDIQVVSTGSLGLDVALGVGGLPRGRVVEIYGPESSG
KTTLTLQVVAEMQKLGGTCAFIDAEHALDVNYAGKLGVNVGDLLISQPDTGEQALEIADALVRSGSIDLIVIDSVAALVP
KAEIEGEMGDALPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSI
KKGDDVIGNETKVKVVKNKVSPPFREAFFDILYGQGISRQGEIIDLGVDAKIVEKSGAWYSYNGEKIGQGKDNAREFLRE
NPDIANEIENKVRVALGVAPLNGTAVAALEE

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=202514 BKK81_RS05310 WP_071011180.1 1186630..1187685(+) (recA) [Cupriavidus sp. USMAHM13 isolate pure]
ATGGACGACAAGAAGGCGGGTGCAGGCGTGAGCGCGGAGAAGCAGAAGGCGCTTGCCGCGGCGCTTTCCCAGATCGAGAA
GCAATTCGGCAAGGGCTCGATCATGCGCCTGGGCGACGGTGACGTCGAGCAGGACATCCAGGTCGTGTCCACCGGTTCGC
TGGGCCTGGACGTCGCGCTCGGCGTGGGCGGCCTGCCGCGCGGCCGCGTGGTGGAGATCTACGGTCCGGAATCGTCGGGC
AAGACCACGCTGACGCTGCAGGTGGTCGCCGAGATGCAGAAGCTGGGCGGCACCTGCGCCTTCATCGACGCCGAGCACGC
GCTCGACGTCAACTATGCCGGCAAGCTGGGCGTCAATGTCGGCGACCTGCTGATCTCGCAGCCCGACACCGGTGAGCAGG
CGCTGGAAATCGCCGACGCGCTGGTGCGCTCCGGCTCCATCGACCTGATCGTGATCGACTCGGTCGCCGCGCTGGTGCCG
AAGGCCGAAATCGAAGGCGAGATGGGCGATGCGCTGCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCTGCGCAAGCT
GACCGGCACCATCAAGCGCACCAACTGCCTGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGTGTGATGTTCGGTT
CGCCCGAAACCACCACCGGCGGCAACGCGCTGAAGTTCTACGCCTCGGTGCGCCTCGATATCCGCCGCATCGGCTCGATC
AAGAAGGGCGACGACGTGATCGGCAACGAGACCAAGGTCAAGGTGGTCAAGAACAAGGTGTCGCCGCCGTTCCGCGAAGC
CTTCTTCGATATCCTCTACGGCCAGGGCATCTCCCGCCAGGGCGAGATCATCGACCTGGGCGTGGATGCCAAGATCGTCG
AGAAGTCGGGCGCCTGGTACAGCTACAACGGCGAGAAGATCGGCCAGGGCAAGGACAATGCGCGCGAATTCCTGCGCGAG
AATCCCGATATCGCCAACGAGATCGAGAACAAGGTGCGCGTGGCGCTGGGCGTGGCCCCGCTGAACGGCACGGCGGTCGC
GGCGCTCGAGGAATGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(16-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1D9GWA9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

87.32

98.86

0.863
  recA Pseudomonas stutzeri DSM 10701

73.669

96.296

0.709
  recA Neisseria gonorrhoeae MS11

73.556

93.732

0.689
  recA Neisseria gonorrhoeae strain FA1090

73.556

93.732

0.689
  recA Neisseria gonorrhoeae MS11

73.556

93.732

0.689
  recA Acinetobacter baylyi ADP1

74.303

92.023

0.684
  recA Acinetobacter baumannii D1279779

72.121

94.017

0.678
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.958

95.157

0.675
  recA Vibrio cholerae strain A1552

70.958

95.157

0.675
  recA Glaesserella parasuis strain SC1401

71.037

93.447

0.664
  recA Helicobacter pylori 26695

62.717

98.575

0.618
  recA Helicobacter pylori strain NCTC11637

62.428

98.575

0.615
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.35

93.732

0.613
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.644

92.877

0.61
  recA Bacillus subtilis subsp. subtilis str. 168

65.138

93.162

0.607
  recA Latilactobacillus sakei subsp. sakei 23K

64.832

93.162

0.604
  recA Streptococcus mutans UA159

61.607

95.726

0.59
  recA Streptococcus mitis NCTC 12261

60.882

96.866

0.59
  recA Streptococcus mitis SK321

61.631

94.302

0.581
  recA Lactococcus lactis subsp. cremoris KW2

61.631

94.302

0.581
  recA Streptococcus pneumoniae D39

61.329

94.302

0.578
  recA Streptococcus pneumoniae Rx1

61.329

94.302

0.578
  recA Streptococcus pneumoniae R6

61.329

94.302

0.578
  recA Streptococcus pneumoniae TIGR4

61.329

94.302

0.578
  recA Streptococcus pyogenes NZ131

61.094

93.732

0.573
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.538

92.593

0.57

Multiple sequence alignment